Gene detail

Detailed information of evm.model.Ap5.2164 in Astrangia poculata

Genomic Location: Ap5:22672816...22685611
NR annotation: XP_020616795.1, uncharacterized protein LOC110054782 isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2164

atgaaggaagcaatttgtacagtttgtgagtccaaagaacctgttatttgttgtgccacttgtgaggcattgtactgtgaaaactgcaaaatatcggtccatgaaaagaattatggtaataaatctggagcaaaggaagaaacaaatccaactagtttgaaatcattttggcctgaaaattattcatttaaaactacaacaagttgtacagcttctcagcaaggtaaacaatcctctggcactatcacagatgtctcggcaaccaagaaaaaatcggcaagtcagggagtaactcctgctccgcgcacaaggacaactgctatcacaaaaacatcacctcaaaagactgctaaagaatcaagcagcaagaagaaaactgagattaagaaagagaatagctatgatgccagcgacagtgactcggaacaaggcagtgtagatagattaaacactgatggtgactttggctatgagacaggctctcttgacgacagtgacgtgtcgacgggagagcttcttagcccttcaggcaaagacgagcataagactattttaactcctgaccaaagtggaagcaccagttattcatatgctgatgtcgaatttagaccactactggtcacagaggaaggtggtatagctacaaggaatccagaaaagtttagttcagaagataacactttactttcagcgaatgacgagggcgccaatgaccgcagatcttatacttacgctggagatgaattccgtccattgattgtgaaagaggatgtgggcatcgctgcccctgttggaggatggaagtcatcgaaagacactgaggataaaaatggcaatgaaggtgataagcgtggcagtgggggtaggcaaatgctaagggaatatgaagaggttgaaattgttgatggtggctatgacaggtcaaacattaaggtggcatctgctaatcaaaaaaatgtggcagaaagtgacgatttgcatgctattggacctttgaatgatgtttatgctgttgtacaaaaaaagccaaaggaaacagaagacagtgcaacacagaaacaaaacaatccaatacagagaccaactgttgagttgggtgatgttgcaccagcaattccaggaggacgtaaagattcaaacatgtacgaagcgataacaggagagcttcaaaatatgataatggcgtgtgatgatgtagagctagatgagaaaccagtgaggactaattcttatgagagaaaaggatcttcaggggaaaagaaagttccgccacccatcccaaagccttattcagggccagggttgaatgcggcagtgaaaaaggaaccattgacaaaggaagcaccagggaaagatgaaagagaaactacagaggttatatcacagccactatatgccgttgtacaaaagaaacccaaagacaaaccagcagaagataaaccttctggtgatatggacagcaaaacatctgcagagataaagtcacaggagagccagcaaacctatgctgtagtacagaagaaatccaaaccagagcagaatagttcagttgaatcacttgatcagcttaggatacctgcagcgagtgatgatgatgatgacgaaagtgaagaagaattgccgccacctcttccttcaaggctaccaaatcttgaggacactatgaaaagaactgaacctggcaatgaaaatgtcttccagtttgatgaagtagaaaaacctgaagaaaaacctaagaagggtggtttcaatatatttaagaagaagcatcgcagacagctgtctgatggcaatgtagttgctcaaataaaaaacggcaatgaaaaatgtgacctttctcctggtgtagccgagaaaaataaatttaaccatcgccgttcaaaatcacaagcagatgttatgaaagtggtggaaaatggcgagcgctcactgtgccctttagaaacccatgaaatgtacacagaagttacaattccttccaacaaaacaaagagtcctgacgaggttccgcctgtgaagccttacttagaagtcgacataactgagccgccacacacccctacagatataaagaaagaaaaggaatccatgggaggggacagtgaggatcagaatgctccatacgagttgcccgagggatggagggaagttaagggtgatggcggcacatactactggcatgttgcatctggaacaactcaatggacactcccacaggtcgcaacaagaccaaagaagaagtcagttgaagaagcaaaacctgcagaaagcacagagaaacaaaaggtccttagtttcccagtacactctatgggttggattgagcttgaggagagccaggtagcaccacataacatgagtgagaccatcgccgagtgcatctccacactggcacagaaaagaaaagacctgtggaacacttcagagacttggggcgagggaaaggacataagattgctattagaaggagacacccttaaacttgtagaaccaagaaccaaaatcacgttactagtccagcctgtctcaaaaatgagagtgtggggagttggcaaagaagaccagagggactttgcctatgttgcacgggatccttcaaccggcaaacacaagtgccacatgttccgttgccatggtaacatctctggtcgcgcaatcacaaatgcattacatgacatgtgtagtaaaatcctggaagagaagaagaaagcacaagaaagcagcaggaaaacgtcaacacaaaagccatggtctgacatcatcaacactccaccaccttcatcggcaagagataatgccagttttaatgaaaaaccacatgtggaaccaaagaagagcttttctgctaaatatgttgggtgcatagatgtttcaaaaccaacaggtgtggaggtcttgaacaaggcaattaacaaattaacaagtaaaggaggcagcacttggaaaacaatcctcattgaaatcagcgttgctaacatcaggataacagactgtgcgacacaagagctaatttcagaagaccgagtcagattcatgtcattctttggagttggaaaggatgaaagactgtgtggttacattgtaagtactgctccagacgtgtttgtctgccatgtgttccagtgtactccaaatgctgcacctctaacaaaagcattagctgaggcatgccagctacgtttccaaaagtgtgtggatgctcatccagaaattgttcagaaagtagcaactgctgagcaagagaagacaaaagaaaaatctgacaaagacaaggataaagccggtttcatgacaagtgttcaggggttgtttggaaagcttggcccaaagaaagggggagggaaaaaggatgaaggaaatgctcctgagagcaaaccacctgccagcaatatccctgttattacttgtaagccgtcgcacacgtttatggtgaagtattatggtgccctgcctgtggccgtgggtacagggattgagacagtggaggaggcagctaagcatctggcaggaggaaccttgttagtttgtcagttggatgtcgcactcaatggagtgacactttacgacagtcaaagaagttcactgtcaaaaaggaacttggatgctgatacaatatcatattgtggtctaacaagtaacagaagtcattttggactcatacaaagcatgggaggaggcaaatacgtttgccatgtatttgcggaatataagaccaaagctggacctattgttgctgctattcatgagacactgtga

Transcript

evm.model.Ap5.2164

ATGAAGGAAGCAATTTGTACAGTTTGTGAGTCCAAAGAACCTGTTATTTGTTGTGCCACTTGTGAGGCATTGTACTGTGAAAACTGCAAAATATCGGTCCATGAAAAGAATTATGGTAATAAATCTGGAGCAAAGGAAGAAACAAATCCAACTAGTTTGAAATCATTTTGGCCTGAAAATTATTCATTTAAAACTACAACAAGTTGTACAGCTTCTCAGCAAGGTAAACAATCCTCTGGCACTATCACAGATGTCTCGGCAACCAAGAAAAAATCGGCAAGTCAGGGAGTAACTCCTGCTCCGCGCACAAGGACAACTGCTATCACAAAAACATCACCTCAAAAGACTGCTAAAGAATCAAGCAGCAAGAAGAAAACTGAGATTAAGAAAGAGAATAGCTATGATGCCAGCGACAGTGACTCGGAACAAGGCAGTGTAGATAGATTAAACACTGATGGTGACTTTGGCTATGAGACAGGCTCTCTTGACGACAGTGACGTGTCGACGGGAGAGCTTCTTAGCCCTTCAGGCAAAGACGAGCATAAGACTATTTTAACTCCTGACCAAAGTGGAAGCACCAGTTATTCATATGCTGATGTCGAATTTAGACCACTACTGGTCACAGAGGAAGGTGGTATAGCTACAAGGAATCCAGAAAAGTTTAGTTCAGAAGATAACACTTTACTTTCAGCGAATGACGAGGGCGCCAATGACCGCAGATCTTATACTTACGCTGGAGATGAATTCCGTCCATTGATTGTGAAAGAGGATGTGGGCATCGCTGCCCCTGTTGGAGGATGGAAGTCATCGAAAGACACTGAGGATAAAAATGGCAATGAAGGTGATAAGCGTGGCAGTGGGGGTAGGCAAATGCTAAGGGAATATGAAGAGGTTGAAATTGTTGATGGTGGCTATGACAGGTCAAACATTAAGGTGGCATCTGCTAATCAAAAAAATGTGGCAGAAAGTGACGATTTGCATGCTATTGGACCTTTGAATGATGTTTATGCTGTTGTACAAAAAAAGCCAAAGGAAACAGAAGACAGTGCAACACAGAAACAAAACAATCCAATACAGAGACCAACTGTTGAGTTGGGTGATGTTGCACCAGCAATTCCAGGAGGACGTAAAGATTCAAACATGTACGAAGCGATAACAGGAGAGCTTCAAAATATGATAATGGCGTGTGATGATGTAGAGCTAGATGAGAAACCAGTGAGGACTAATTCTTATGAGAGAAAAGGATCTTCAGGGGAAAAGAAAGTTCCGCCACCCATCCCAAAGCCTTATTCAGGGCCAGGGTTGAATGCGGCAGTGAAAAAGGAACCATTGACAAAGGAAGCACCAGGGAAAGATGAAAGAGAAACTACAGAGGTTATATCACAGCCACTATATGCCGTTGTACAAAAGAAACCCAAAGACAAACCAGCAGAAGATAAACCTTCTGGTGATATGGACAGCAAAACATCTGCAGAGATAAAGTCACAGGAGAGCCAGCAAACCTATGCTGTAGTACAGAAGAAATCCAAACCAGAGCAGAATAGTTCAGTTGAATCACTTGATCAGCTTAGGATACCTGCAGCGAGTGATGATGATGATGACGAAAGTGAAGAAGAATTGCCGCCACCTCTTCCTTCAAGGCTACCAAATCTTGAGGACACTATGAAAAGAACTGAACCTGGCAATGAAAATGTCTTCCAGTTTGATGAAGTAGAAAAACCTGAAGAAAAACCTAAGAAGGGTGGTTTCAATATATTTAAGAAGAAGCATCGCAGACAGCTGTCTGATGGCAATGTAGTTGCTCAAATAAAAAACGGCAATGAAAAATGTGACCTTTCTCCTGGTGTAGCCGAGAAAAATAAATTTAACCATCGCCGTTCAAAATCACAAGCAGATGTTATGAAAGTGGTGGAAAATGGCGAGCGCTCACTGTGCCCTTTAGAAACCCATGAAATGTACACAGAAGTTACAATTCCTTCCAACAAAACAAAGAGTCCTGACGAGGTTCCGCCTGTGAAGCCTTACTTAGAAGTCGACATAACTGAGCCGCCACACACCCCTACAGATATAAAGAAAGAAAAGGAATCCATGGGAGGGGACAGTGAGGATCAGAATGCTCCATACGAGTTGCCCGAGGGATGGAGGGAAGTTAAGGGTGATGGCGGCACATACTACTGGCATGTTGCATCTGGAACAACTCAATGGACACTCCCACAGGTCGCAACAAGACCAAAGAAGAAGTCAGTTGAAGAAGCAAAACCTGCAGAAAGCACAGAGAAACAAAAGGTCCTTAGTTTCCCAGTACACTCTATGGGTTGGATTGAGCTTGAGGAGAGCCAGGTAGCACCACATAACATGAGTGAGACCATCGCCGAGTGCATCTCCACACTGGCACAGAAAAGAAAAGACCTGTGGAACACTTCAGAGACTTGGGGCGAGGGAAAGGACATAAGATTGCTATTAGAAGGAGACACCCTTAAACTTGTAGAACCAAGAACCAAAATCACGTTACTAGTCCAGCCTGTCTCAAAAATGAGAGTGTGGGGAGTTGGCAAAGAAGACCAGAGGGACTTTGCCTATGTTGCACGGGATCCTTCAACCGGCAAACACAAGTGCCACATGTTCCGTTGCCATGGTAACATCTCTGGTCGCGCAATCACAAATGCATTACATGACATGTGTAGTAAAATCCTGGAAGAGAAGAAGAAAGCACAAGAAAGCAGCAGGAAAACGTCAACACAAAAGCCATGGTCTGACATCATCAACACTCCACCACCTTCATCGGCAAGAGATAATGCCAGTTTTAATGAAAAACCACATGTGGAACCAAAGAAGAGCTTTTCTGCTAAATATGTTGGGTGCATAGATGTTTCAAAACCAACAGGTGTGGAGGTCTTGAACAAGGCAATTAACAAATTAACAAGTAAAGGAGGCAGCACTTGGAAAACAATCCTCATTGAAATCAGCGTTGCTAACATCAGGATAACAGACTGTGCGACACAAGAGCTAATTTCAGAAGACCGAGTCAGATTCATGTCATTCTTTGGAGTTGGAAAGGATGAAAGACTGTGTGGTTACATTGTAAGTACTGCTCCAGACGTGTTTGTCTGCCATGTGTTCCAGTGTACTCCAAATGCTGCACCTCTAACAAAAGCATTAGCTGAGGCATGCCAGCTACGTTTCCAAAAGTGTGTGGATGCTCATCCAGAAATTGTTCAGAAAGTAGCAACTGCTGAGCAAGAGAAGACAAAAGAAAAATCTGACAAAGACAAGGATAAAGCCGGTTTCATGACAAGTGTTCAGGGGTTGTTTGGAAAGCTTGGCCCAAAGAAAGGGGGAGGGAAAAAGGATGAAGGAAATGCTCCTGAGAGCAAACCACCTGCCAGCAATATCCCTGTTATTACTTGTAAGCCGTCGCACACGTTTATGGTGAAGTATTATGGTGCCCTGCCTGTGGCCGTGGGTACAGGGATTGAGACAGTGGAGGAGGCAGCTAAGCATCTGGCAGGAGGAACCTTGTTAGTTTGTCAGTTGGATGTCGCACTCAATGGAGTGACACTTTACGACAGTCAAAGAAGTTCACTGTCAAAAAGGAACTTGGATGCTGATACAATATCATATTGTGGTCTAACAAGTAACAGAAGTCATTTTGGACTCATACAAAGCATGGGAGGAGGCAAATACGTTTGCCATGTATTTGCGGAATATAAGACCAAAGCTGGACCTATTGTTGCTGCTATTCATGAGACACTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00213	Amyloid beta precursor protein binding family B member 1 OS=Homo sapiens OX=9606 GN=APBB1 PE=1 SV=2
Q9QXJ1	Amyloid beta precursor protein binding family B member 1 OS=Mus musculus OX=10090 GN=Apbb1 PE=1 SV=3
P46933	Amyloid beta precursor protein binding family B member 1 OS=Rattus norvegicus OX=10116 GN=Apbb1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003371 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR039576 all species →	Family	Amyloid beta precursor protein binding family B member 1/2/3	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14058 all species →	AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0001540 all species →	Molecular Function	amyloid-beta binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.2164.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.