Detailed information of evm.model.Ap5.2166 in Astrangia poculata

Genomic Location: Ap5:22713515...22749868
NR annotation: CAH3113790.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8QG64E3 ubiquitin-protein ligase RBX1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2
P62877E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1
P62878E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004121 (this species only)
Transcription factor familyAF-4 · all TF in this species
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05110
all species →		AF-4AF-4 proto-oncoprotein N-terminal regionFamilyInterproscan
PF18876
all species →		AFF4_CHDAFF4, C-terminal homology domainDomainInterproscan
PF12678
all species →		zf-rbx1RING-H2 zinc finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR007797
all species →		FamilyAF4/FMR2 familyInterproscan
IPR043640
all species →		DomainAF4/FMR2, C-terminal homology domainInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR024766
all species →		DomainZinc finger, RING-H2-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10528
all species →		AF4/FMR2 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0010468
all species →		Biological Processregulation of gene expressionInterproscan
GO:0032783
all species →		Cellular Componentsuper elongation complexInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap5.2166.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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