Gene detail

Detailed information of evm.model.Ap5.2246 in Astrangia poculata

Genomic Location: Ap5:23485177...23495467
NR annotation: XP_020619949.1, neurobeachin-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2246

atgttcaagtttgctgatcagcagaccgtgaggagagtggtacgagctcttccacctgttggagtcggcacatattatgggatacctcaaaccagggcggcttcattatattctcctcgccagcttttccagaagtccaccatgacgaaccgttggcagaaaggagaagtgtctaattttcagtatctcatgttcctcaacaccatcgctggtcgaagtttctgtgatcttaatcagtatcccgtgtttccgtgggttctgaccaaatacgagaccgacaccctggatctgacggatcccaacaattacagagacctttccaagcccatcggtgttcttaaccctacaagacacgcgcagtttctcgaacgttacgcatcctgggatgaaaatgacgacattcctccgtttcactatggcacgcactattcaacatccgggttcacgctagcttggatgattcgcgtggagccgtttgctacacagtttctcaatcttcaaggcggtaaatttgaccatcctggaagaacgttctgttctatcatccgttcttgggaaaattgtcagcgagacacgtcagacgtcaaggagcttatcccagagctgtattattttccagagatgtttgtgaactccaataattttacgttcggtattgacgacgatggagtggtcattgatgacgtggagcttcctaaatgggcgtcaacacccgaggaatttgtcatgttacacagagcggctttagaatcaaaatacgtgtcttcccatcttcacgaatgggtcgatctcatattcggatttaaacagaaaggtcctgaagcagtgaaagctaccaatgtgtttttccacttgacttatgaagggaatgttgacttggactccattgccgatccagtcatgagagaggccgttgaacaacagatcaaaagttttggccaaacgccttcgcagctgttacatgaaccgcacattacaagaatacctctggagcagaatacagaagaagaggagccatttaaaagtatatatttgactttcaaagtcacgggtgatgttccagtgactcacgtggcagccaacacggactccaccgtcccttcccctgctgtagtaacgatcagttgtaaccagtgcttctcggttaacaaatgggtgacgtcagcggacctaaagcaaagtcttaaaggagttcaagttgaacaagacccaatgctagctacatccgctggccggcagaagcggcaactgggtgaaccgctggaccaatcagtgacaccgtgcgcctgctgttttgtggtgaccgctgacaacaagtacatcatggcttgcggctactgggataacagcttcaaatgtttttcggcggaaagtggtaaactgacacagtgcgtgttcggccactgggacgtggtcacgtgcttggcatactcgcgtcacgtgggtctgacaggaggagacgcgtttgtcgtatctggatcacgtgacgctactgtattggtttggcggtggagcgaacggctccagagagtagcggcatctgaccgagcggagggagacaatccttctcccctggccattcttactgggcacgaacagcctgtagtctgtgttgacgtcagcgcttcccttggacttgtggtcagcggttcacaagagggtccttgcctcttgcacactaccacaggaaatctcttgcgcaccctgcggggtcccggagagtgcgtcagaccgaggctgttgaagctgacccgcgatggcctggtgctagttaactacactgacgggacaggtcatctggcagtgttcacaatcaatggcaggttgctaagcgacaaaaggcttgatgatcagatgctggcattggctctgaacaaagacgggaatttcttcgtgtccggagggtttagccggtacttaagggtgtggcggactcacgacttgaccttactacacacgtatccaccatgtgatggcagcattagagcccttactatctctaccgatcagaggtgtttggtggctggactggcttcaggcagtattctggctatcgccgtgaattttccaggtcgcctttga

Transcript

evm.model.Ap5.2246

TGGCCGTTGGATGCGATAAAAGCCGTATTTTCACGAAGATTCCTGTTGCAGAACTGTGCGGTCGAGGTGTATACTTCAACCGGAACATCTGTGATGTTCAAGTTTGCTGATCAGCAGACCGTGAGGAGAGTGGTACGAGCTCTTCCACCTGTTGGAGTCGGCACATATTATGGGATACCTCAAACCAGGGCGGCTTCATTATATTCTCCTCGCCAGCTTTTCCAGAAGTCCACCATGACGAACCGTTGGCAGAAAGGAGAAGTGTCTAATTTTCAGTATCTCATGTTCCTCAACACCATCGCTGGTCGAAGTTTCTGTGATCTTAATCAGTATCCCGTGTTTCCGTGGGTTCTGACCAAATACGAGACCGACACCCTGGATCTGACGGATCCCAACAATTACAGAGACCTTTCCAAGCCCATCGGTGTTCTTAACCCTACAAGACACGCGCAGTTTCTCGAACGTTACGCATCCTGGGATGAAAATGACGACATTCCTCCGTTTCACTATGGCACGCACTATTCAACATCCGGGTTCACGCTAGCTTGGATGATTCGCGTGGAGCCGTTTGCTACACAGTTTCTCAATCTTCAAGGCGGTAAATTTGACCATCCTGGAAGAACGTTCTGTTCTATCATCCGTTCTTGGGAAAATTGTCAGCGAGACACGTCAGACGTCAAGGAGCTTATCCCAGAGCTGTATTATTTTCCAGAGATGTTTGTGAACTCCAATAATTTTACGTTCGGTATTGACGACGATGGAGTGGTCATTGATGACGTGGAGCTTCCTAAATGGGCGTCAACACCCGAGGAATTTGTCATGTTACACAGAGCGGCTTTAGAATCAAAATACGTGTCTTCCCATCTTCACGAATGGGTCGATCTCATATTCGGATTTAAACAGAAAGGTCCTGAAGCAGTGAAAGCTACCAATGTGTTTTTCCACTTGACTTATGAAGGGAATGTTGACTTGGACTCCATTGCCGATCCAGTCATGAGAGAGGCCGTTGAACAACAGATCAAAAGTTTTGGCCAAACGCCTTCGCAGCTGTTACATGAACCGCACATTACAAGAATACCTCTGGAGCAGAATACAGAAGAAGAGGAGCCATTTAAAAGTATATATTTGACTTTCAAAGTCACGGGTGATGTTCCAGTGACTCACGTGGCAGCCAACACGGACTCCACCGTCCCTTCCCCTGCTGTAGTAACGATCAGTTGTAACCAGTGCTTCTCGGTTAACAAATGGGTGACGTCAGCGGACCTAAAGCAAAGTCTTAAAGGAGTTCAAGTTGAACAAGACCCAATGCTAGCTACATCCGCTGGCCGGCAGAAGCGGCAACTGGGTGAACCGCTGGACCAATCAGTGACACCGTGCGCCTGCTGTTTTGTGGTGACCGCTGACAACAAGTACATCATGGCTTGCGGCTACTGGGATAACAGCTTCAAATGTTTTTCGGCGGAAAGTGGTAAACTGACACAGTGCGTGTTCGGCCACTGGGACGTGGTCACGTGCTTGGCATACTCGCGTCACGTGGGTCTGACAGGAGGAGACGCGTTTGTCGTATCTGGATCACGTGACGCTACTGTATTGGTTTGGCGGTGGAGCGAACGGCTCCAGAGAGTAGCGGCATCTGACCGAGCGGAGGGAGACAATCCTTCTCCCCTGGCCATTCTTACTGGGCACGAACAGCCTGTAGTCTGTGTTGACGTCAGCGCTTCCCTTGGACTTGTGGTCAGCGGTTCACAAGAGGGTCCTTGCCTCTTGCACACTACCACAGGAAATCTCTTGCGCACCCTGCGGGGTCCCGGAGAGTGCGTCAGACCGAGGCTGTTGAAGCTGACCCGCGATGGCCTGGTGCTAGTTAACTACACTGACGGGACAGGTCATCTGGCAGTGTTCACAATCAATGGCAGGTTGCTAAGCGACAAAAGGCTTGATGATCAGATGCTGGCATTGGCTCTGAACAAAGACGGGAATTTCTTCGTGTCCGGAGGGTTTAGCCGGTACTTAAGGGTGTGGCGGACTCACGACTTGACCTTACTACACACGTATCCACCATGTGATGGCAGCATTAGAGCCCTTACTATCTCTACCGATCAGAGGTGTTTGGTGGCTGGACTGGCTTCAGGCAGTATTCTGGCTATCGCCGTGAATTTTCCAGGTCGCCTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NFP9	Neurobeachin OS=Homo sapiens OX=9606 GN=NBEA PE=1 SV=3
Q9EPN1	Neurobeachin OS=Mus musculus OX=10090 GN=Nbea PE=1 SV=1
P50851	Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens OX=9606 GN=LRBA PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002584 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20426 all species →	NBCH_WD40	Neurobeachin beta propeller domain	Repeat	Interproscan
PF02138 all species →	Beach	Beige/BEACH domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000409 all species →	Domain	BEACH domain	Interproscan
IPR046851 all species →	Domain	Neurobeachin, beta-propeller domain	Interproscan
IPR036372 all species →	Homologous_superfamily	BEACH domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR050865 all species →	Family	BEACH Domain-Containing	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13743 all species →	BEIGE/BEACH-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.2246.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.