Gene detail

Detailed information of evm.model.Ap5.2277 in Astrangia poculata

Genomic Location: Ap5:23815471...23840094
NR annotation: XP_020619921.1, chromosome-associated kinesin KIF4-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2277

atgccagaggaaaaagagaagaccattccagttcgtgtagcgttgagaatcagaccgctagttccaaaagagaccggcgatggttgtcaagagtgtattcgttgtgtaccagggaatgcccaagttgttatcggcgaggacaaagcttttacctacgattatgtgttgggaactactagtaagcaggaggaactttacaatgaaactgtgattccgttgctggaaggattatttaaaggttataatgcgacagttcttgcgtatggccaaactggatcgggtaaaacctattcaataggaacagcgtttacgacgtgcaatgaggcttcggaggaaaagggggttattccacgcctgatagaaactgtatttgaatggatcgatcagaaaaaagacacaacagcgttcctgttaaaagcatcgtttttagagattcacaacgaagagatccacgaccttttaaacccctgcccaccagaagagtcaaaaatagccataagagaaagccatgatggaggaattaagattgctggtttacaagaagtcactgtgacatctggggctgacatggtgcggtgcttagagcaagggtcagcttcaagagcaactggggctactgcaatgaatagccgatcaagtagatctcatgctatttttacaattaccctagaacagaaggagctgcaagggagtgaacttaaaaaggcaaagtttcatctagtagacctggctggttcggaaagagttaagaagactcatgctcaaggcgaacgctttaaggaaggtgtcaacatcaacaagggactcctagctcttggaaatgtgatcagtgccctcagtgatgaacttaggaaatccaatgctcatgtcccttaccgagactccaagttaacacgccttcttcaagattccctgggaggtaatagcaatacaatgatgatagcctgtgtcagtcctgcagacagcaacttcgaagaaactttgaataccctcagatacgcggaccgcgcaaggcagatcaagaacaagcccattgttaatcttgatccagctgcagctgagctggctcggctcagacaacaagtccagttactgcaaatgcagcttattcagggacagacgatcacgggagcgaatccaggaggagcgagctgcgaaaatacgggcgtaaacatccaagaaatggcggataggatcgcagaactcgagtcagaaaatgaaaagctcagcgcggagctgcacgcttcagtggatcagaatacgcagatgtacgaaaaaacgttggtgcttggtcttttccctccagactctttaggaaagatcaaaccctcatccttcattcacaatgactgcttaacttccgctgagttggcgagggataagatgtttagaaagttcaatgaactgaagagtcatcttagttctaaagttgactcaaagaatacggactcgaacggggatgttgaagttgaacccaatgtaagccttgtggaagaacttcaaacgaaactacatgagcttgaggacacttttgtctcaaccacgcaactagaggatgttgtcaagaatgaagaacagaataccagtgcaggcttagaacacgcggatgagtgtgacaacagctctcgccccagctctccatcagacgccacgtttgtttcccagcacgctttgagacaggcagagcttggacggcagctccaggaattgaccaaagcactggctatgaaagaagagttagccaataagatggtagcaaatgactcacggctgaccagtatgagaaaacagtatgaggatactgttcgagaattggagggtgaaatttctagattagagaaagaaaaggcaactctaaacgtggcgttgagcaccgcaaagtctgagagctccgacggtaaaagcaaagaaaagaataaaagtcggatcaaggaactagaagcaaaaatcttagagttgaagaagaagcaggttgaacagcagaaactgttaaaactgaaggaacaaagcgacactaccattaagaagctcaactccgaaattcagggcatgaaatccattcgtgtaaaactcatgcgccaaatgaaggaggagtctgaacgctttagagcactgaaggctcagaaagagaaagaaattaaccagctaaaacaacagggtcgcaaaaggcagttcgagtacaagaagttagagtccattcacatgaaacagcaggctgtccttaaaaggaaaacggaggaggttacagcggttcaaaagcgtctaaagatggcgcttgatcgacagaaagaggcagcagagaagcgatccactcatcagcaacaacaacaaaaacaagcggatggcctgttgccgcgaatgaagtcctggttaagtcatgaggtcgaagttcttgtgagtgttggtcaggccagacaaacactagaaaatctcattgaagatagaaaggtgttgtcaaggcaactagcagaattacgaagccaagaacaggatgaagatgacgaacccgctgcaaagaaaatggtgcaagatggcggaacgccaggagaaaagaaaaacatatcacatgacctacaaaaaaagatgactgctcttgaacacgaactggaactcaggagtgctcagattgctggtcttcaacagaaactccttgatgcggagcaaggtgagaagtccaaacatcgctggaacaatattcacaccatggcagaggctaaagcagggctaaaagcattacttagcatgacagtaacagccaaactagtaaacgccacagctgacaagtccagagaagagtctgaacaaatgtgtcaagagcttcggtcacgtgagcagtccactattcaagagcaccaggccaaaattgcaaaactaaaacagtcccacgacaacgtgttgactcgtcttaaagaagaacacgaagaaaaggttcaatgtcttcttcagcagataacgtcctataaaaaatctgaagaccagtttcaggaacaacacgacgcgctaaaagaagaaaacagaaaattaaaagagcaattaaaacaattgaatgatgtctttgcaaccgattctccatcgccccagccaagaagaaagacatctacaaaagcgcctgaaacaattgaagtagaagatgacgattgggctatgggtttgagtgaggaaagcgaggctgaagactccactgagcgtgatccagactatgtacagaccgccccactttcccctgacactccaatggtttttcgtccacataagagacccgcgcgtagaacacgatccacggaaaaatcttcattgtcgcttctcaaaaattctgatcaggctcagggctgtagctgtacaggaaagtgcgcgacgaataactgtccatgcaagaaaaacacttcatcctgttcagaagattgtggttgtaaggcaatgaagtgcatcaaccgacaacagaaatcccttcaggcagtaccaattttgagcactatatcagccagcgacgtcgaaaacgaatcttcgcctcgctcaaacacagaaagcgaagagcggaaagcgttaatcgaagtaaaaaataaaattccccaggctattaaaaagtccgacaagaagaccatgccatcgtcgatcaaacaaaacggaacagaaaatcagcctctcctgagcaaacgtccaaaaatctttcacaaaccgcactcgagtagctcagtttcgtcttcagatgaagactcgaggcagcgcggattctctcgacccgggactacacctggacggtctgttatcgtgcatggaaagccgagaacgcctgggttcagctttggttctgccaagaaggcgaacaggaggaagtcgataacaaaatttcacccggaaaacaagcggaaacgaaagttgatgaaacccgtcaataatgcttcaagtctgggtgggaggccttga

Transcript

evm.model.Ap5.2277

ATGCCAGAGGAAAAAGAGAAGACCATTCCAGTTCGTGTAGCGTTGAGAATCAGACCGCTAGTTCCAAAAGAGACCGGCGATGGTTGTCAAGAGTGTATTCGTTGTGTACCAGGGAATGCCCAAGTTGTTATCGGCGAGGACAAAGCTTTTACCTACGATTATGTGTTGGGAACTACTAGTAAGCAGGAGGAACTTTACAATGAAACTGTGATTCCGTTGCTGGAAGGATTATTTAAAGGTTATAATGCGACAGTTCTTGCGTATGGCCAAACTGGATCGGGTAAAACCTATTCAATAGGAACAGCGTTTACGACGTGCAATGAGGCTTCGGAGGAAAAGGGGGTTATTCCACGCCTGATAGAAACTGTATTTGAATGGATCGATCAGAAAAAAGACACAACAGCGTTCCTGTTAAAAGCATCGTTTTTAGAGATTCACAACGAAGAGATCCACGACCTTTTAAACCCCTGCCCACCAGAAGAGTCAAAAATAGCCATAAGAGAAAGCCATGATGGAGGAATTAAGATTGCTGGTTTACAAGAAGTCACTGTGACATCTGGGGCTGACATGGTGCGGTGCTTAGAGCAAGGGTCAGCTTCAAGAGCAACTGGGGCTACTGCAATGAATAGCCGATCAAGTAGATCTCATGCTATTTTTACAATTACCCTAGAACAGAAGGAGCTGCAAGGGAGTGAACTTAAAAAGGCAAAGTTTCATCTAGTAGACCTGGCTGGTTCGGAAAGAGTTAAGAAGACTCATGCTCAAGGCGAACGCTTTAAGGAAGGTGTCAACATCAACAAGGGACTCCTAGCTCTTGGAAATGTGATCAGTGCCCTCAGTGATGAACTTAGGAAATCCAATGCTCATGTCCCTTACCGAGACTCCAAGTTAACACGCCTTCTTCAAGATTCCCTGGGAGGTAATAGCAATACAATGATGATAGCCTGTGTCAGTCCTGCAGACAGCAACTTCGAAGAAACTTTGAATACCCTCAGATACGCGGACCGCGCAAGGCAGATCAAGAACAAGCCCATTGTTAATCTTGATCCAGCTGCAGCTGAGCTGGCTCGGCTCAGACAACAAGTCCAGTTACTGCAAATGCAGCTTATTCAGGGACAGACGATCACGGGAGCGAATCCAGGAGGAGCGAGCTGCGAAAATACGGGCGTAAACATCCAAGAAATGGCGGATAGGATCGCAGAACTCGAGTCAGAAAATGAAAAGCTCAGCGCGGAGCTGCACGCTTCAGTGGATCAGAATACGCAGATGTACGAAAAAACGTTGGTGCTTGGTCTTTTCCCTCCAGACTCTTTAGGAAAGATCAAACCCTCATCCTTCATTCACAATGACTGCTTAACTTCCGCTGAGTTGGCGAGGGATAAGATGTTTAGAAAGTTCAATGAACTGAAGAGTCATCTTAGTTCTAAAGTTGACTCAAAGAATACGGACTCGAACGGGGATGTTGAAGTTGAACCCAATGTAAGCCTTGTGGAAGAACTTCAAACGAAACTACATGAGCTTGAGGACACTTTTGTCTCAACCACGCAACTAGAGGATGTTGTCAAGAATGAAGAACAGAATACCAGTGCAGGCTTAGAACACGCGGATGAGTGTGACAACAGCTCTCGCCCCAGCTCTCCATCAGACGCCACGTTTGTTTCCCAGCACGCTTTGAGACAGGCAGAGCTTGGACGGCAGCTCCAGGAATTGACCAAAGCACTGGCTATGAAAGAAGAGTTAGCCAATAAGATGGTAGCAAATGACTCACGGCTGACCAGTATGAGAAAACAGTATGAGGATACTGTTCGAGAATTGGAGGGTGAAATTTCTAGATTAGAGAAAGAAAAGGCAACTCTAAACGTGGCGTTGAGCACCGCAAAGTCTGAGAGCTCCGACGGTAAAAGCAAAGAAAAGAATAAAAGTCGGATCAAGGAACTAGAAGCAAAAATCTTAGAGTTGAAGAAGAAGCAGGTTGAACAGCAGAAACTGTTAAAACTGAAGGAACAAAGCGACACTACCATTAAGAAGCTCAACTCCGAAATTCAGGGCATGAAATCCATTCGTGTAAAACTCATGCGCCAAATGAAGGAGGAGTCTGAACGCTTTAGAGCACTGAAGGCTCAGAAAGAGAAAGAAATTAACCAGCTAAAACAACAGGGTCGCAAAAGGCAGTTCGAGTACAAGAAGTTAGAGTCCATTCACATGAAACAGCAGGCTGTCCTTAAAAGGAAAACGGAGGAGGTTACAGCGGTTCAAAAGCGTCTAAAGATGGCGCTTGATCGACAGAAAGAGGCAGCAGAGAAGCGATCCACTCATCAGCAACAACAACAAAAACAAGCGGATGGCCTGTTGCCGCGAATGAAGTCCTGGTTAAGTCATGAGGTCGAAGTTCTTGTGAGTGTTGGTCAGGCCAGACAAACACTAGAAAATCTCATTGAAGATAGAAAGGTGTTGTCAAGGCAACTAGCAGAATTACGAAGCCAAGAACAGGATGAAGATGACGAACCCGCTGCAAAGAAAATGGTGCAAGATGGCGGAACGCCAGGAGAAAAGAAAAACATATCACATGACCTACAAAAAAAGATGACTGCTCTTGAACACGAACTGGAACTCAGGAGTGCTCAGATTGCTGGTCTTCAACAGAAACTCCTTGATGCGGAGCAAGGTGAGAAGTCCAAACATCGCTGGAACAATATTCACACCATGGCAGAGGCTAAAGCAGGGCTAAAAGCATTACTTAGCATGACAGTAACAGCCAAACTAGTAAACGCCACAGCTGACAAGTCCAGAGAAGAGTCTGAACAAATGTGTCAAGAGCTTCGGTCACGTGAGCAGTCCACTATTCAAGAGCACCAGGCCAAAATTGCAAAACTAAAACAGTCCCACGACAACGTGTTGACTCGTCTTAAAGAAGAACACGAAGAAAAGGTTCAATGTCTTCTTCAGCAGATAACGTCCTATAAAAAATCTGAAGACCAGTTTCAGGAACAACACGACGCGCTAAAAGAAGAAAACAGAAAATTAAAAGAGCAATTAAAACAATTGAATGATGTCTTTGCAACCGATTCTCCATCGCCCCAGCCAAGAAGAAAGACATCTACAAAAGCGCCTGAAACAATTGAAGTAGAAGATGACGATTGGGCTATGGGTTTGAGTGAGGAAAGCGAGGCTGAAGACTCCACTGAGCGTGATCCAGACTATGTACAGACCGCCCCACTTTCCCCTGACACTCCAATGGTTTTTCGTCCACATAAGAGACCCGCGCGTAGAACACGATCCACGGAAAAATCTTCATTGTCGCTTCTCAAAAATTCTGATCAGGCTCAGGGCTGTAGCTGTACAGGAAAGTGCGCGACGAATAACTGTCCATGCAAGAAAAACACTTCATCCTGTTCAGAAGATTGTGGTTGTAAGGCAATGAAGTGCATCAACCGACAACAGAAATCCCTTCAGGCAGTACCAATTTTGAGCACTATATCAGCCAGCGACGTCGAAAACGAATCTTCGCCTCGCTCAAACACAGAAAGCGAAGAGCGGAAAGCGTTAATCGAAGTAAAAAATAAAATTCCCCAGGCTATTAAAAAGTCCGACAAGAAGACCATGCCATCGTCGATCAAACAAAACGGAACAGAAAATCAGCCTCTCCTGAGCAAACGTCCAAAAATCTTTCACAAACCGCACTCGAGTAGCTCAGTTTCGTCTTCAGATGAAGACTCGAGGCAGCGCGGATTCTCTCGACCCGGGACTACACCTGGACGGTCTGTTATCGTGCATGGAAAGCCGAGAACGCCTGGGTTCAGCTTTGGTTCTGCCAAGAAGGCGAACAGGAGGAAGTCGATAACAAAATTTCACCCGGAAAACAAGCGGAAACGAAAGTTGATGAAACCCGTCAATAATGCTTCAAGTCTGGGTGGGAGGCCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95239	Chromosome-associated kinesin KIF4A OS=Homo sapiens OX=9606 GN=KIF4A PE=1 SV=3
Q2VIQ3	Chromosome-associated kinesin KIF4B OS=Homo sapiens OX=9606 GN=KIF4B PE=1 SV=2
P33174	Chromosome-associated kinesin KIF4 OS=Mus musculus OX=10090 GN=Kif4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007460 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR033467 all species →	Domain	Tesmin/TSO1-like CXC domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47969 all species →	CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0005875 all species →	Cellular Component	microtubule associated complex	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0051231 all species →	Biological Process	spindle elongation	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10395	KIF4; kinesin family member 4	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.