Gene detail

Detailed information of evm.model.Ap5.2287 in Astrangia poculata

Genomic Location: Ap5:23900010...23911377
NR annotation: XP_027057956.1, lipoyl synthase, mitochondrial-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5BIP7	Lipoyl synthase, mitochondrial OS=Bos taurus OX=9913 GN=LIAS PE=2 SV=1
C3Y3G4	Lipoyl synthase, mitochondrial OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_125969 PE=3 SV=1
Q6PHG4	Lipoyl synthase, mitochondrial OS=Danio rerio OX=7955 GN=lias PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004493 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055 all species →	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF16881 all species →	LIAS_N	N-terminal domain of lipoyl synthase of Radical_SAM family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007197 all species →	Domain	Radical SAM	Interproscan
IPR003698 all species →	Family	Lipoyl synthase	Interproscan
IPR031691 all species →	Domain	Lipoyl synthase, N-terminal	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10949 all species →	LIPOYL SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0009107 all species →	Biological Process	lipoate biosynthetic process	Interproscan
GO:0016992 all species →	Molecular Function	lipoate synthase activity	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.2287.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.