Gene detail

Detailed information of evm.model.Ap5.2323 in Astrangia poculata

Genomic Location: Ap5:24223635...24234859
NR annotation: XP_020615710.1, vacuolar protein-sorting-associated protein 36-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DDF4	Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis OX=8355 GN=vps36 PE=2 SV=1
Q7ZVK4	Vacuolar protein-sorting-associated protein 36 OS=Danio rerio OX=7955 GN=vps36 PE=2 SV=1
Q86VN1	Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens OX=9606 GN=VPS36 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004808 (this species only)
Ubiquitin family	UBD\|PH\|GLUE · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04157 all species →	EAP30	EAP30/Vps36 family	Family	Interproscan
PF11605 all species →	Vps36_ESCRT-II	Vacuolar protein sorting protein 36 Vps36	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR021648 all species →	Domain	Vacuolar protein sorting protein 36, GLUE domain	Interproscan
IPR037855 all species →	Family	Vacuolar protein sorting protein 36	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR040608 all species →	Family	Snf8/Vps36 family	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13128 all species →	VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0000814 all species →	Cellular Component	ESCRT II complex	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0032509 all species →	Biological Process	endosome transport via multivesicular body sorting pathway	Interproscan
GO:0043328 all species →	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12190	VPS36, EAP45; ESCRT-II complex subunit VPS36	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.