Genomic Location: Ap5:24317093...24348842
NR annotation: CAH3045967.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap5.2329 |
| Transcript |
| evm.model.Ap5.2329 |
| Protein |
| evm.model.Ap5.2329 |
| UniProt accession | Description |
|---|---|
| Q6PHS9 | Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Mus musculus OX=10090 GN=Cacna2d2 PE=1 SV=1 |
| Q9NY47 | Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Homo sapiens OX=9606 GN=CACNA2D2 PE=1 SV=2 |
| Q8CFG6 | Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Rattus norvegicus OX=10116 GN=Cacna2d2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000966 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08399 all species → | VWA_N | VWA N-terminal | Family | Interproscan |
| PF00092 all species → | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| PF08473 all species → | VGCC_alpha2 | Neuronal voltage-dependent calcium channel alpha 2acd | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013608 all species → | Domain | VWA N-terminal | Interproscan |
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR002035 all species → | Domain | von Willebrand factor, type A | Interproscan |
| IPR051173 all species → | Family | Voltage-dependent calcium channel subunit alpha-2/delta | Interproscan |
| IPR013680 all species → | Domain | Voltage-dependent calcium channel, alpha-2/delta subunit, conserved region | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10166 all species → | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005245 all species → | Molecular Function | voltage-gated calcium channel activity | Interproscan |
| GO:0005891 all species → | Cellular Component | voltage-gated calcium channel complex | Interproscan |
evm.model.Ap5.2329.Transcript abundance of evm.model.Ap5.2329 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
