Gene detail

Detailed information of evm.model.Ap5.2353 in Astrangia poculata

Genomic Location: Ap5:24560922...24576308
NR annotation: XP_020629614.1, pre-mRNA cleavage complex 2 protein Pcf11-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2353

atggagtctggagaagaagctatttgtgaggagtatgaatcctctcttgaagacttatcatttaattctaaaccacttataaatgtgctcacaatgttggcggaagaaaacaaacagtatgcattgagtataacacagcttattgcaaatcgtatctaccaggtgccacagcaaacaaaactgccatcgctttatctgcttgactccatcgttaagaatgttggaggagagtaccttcatcttgttgcacaaatcatggaaaagacatttacttgtgtatttgaaaaggcagatgagaagactcgtcgtgacctgttcaagttacggaacacctgggcgcagtattttcctccaaagatgttgtatgatttggatgttgctgtgaacaagcatgaccctggctggcccattccccctgcaccaccaccaagcccgtctatacacatcaaccccaagtttctgaaaaaggcagagagtgctggcactgttgcctcattaactgcaggcatatcaacacctcaggaacagatggtggtggaggatcaccaacaacgcttggacgagcttgagagactacaggaggagcagctgaagctaacagaacttgagatccaggagcatcaaatgaagagagatcttttacttaagaaacagcagcaagaacgaaaactccttctacagcagcaacagcaacatatacttcacttgcgactgcagccagaagatcaagactctacactatccaatgggcctccagttcgtgccccagtgtcaaccaaagcagagtccaccaagagtgttcaagggacatcaagtagtcgagatccacgtcttcgtcgaagcgagctagaatctgatcatctccaagagccaatgcctttggaagtaaggaaacctgattttgtccaagaaaggaagttgattgatacccaaggaagtttaccgataagtgctagacatggacatgttccctctgttacaggggaagtccagtttgagcagacattaggaaggccaccagaacaattttttgatcccttacagccagacttggaagctgcccaaacccaagagatcagaagtctgcaacacatggctcgggtgcagaatccagtagaaaatgtcagcaggaacaatctagacagagaagtcacaggcagcccaaagtatggtgatctgcaaaggccatcaaagcctaaacaaaaccataaaaggcgaaattccggtgactggtcaagtccccctccaagtcatgaaaacaggcctgatgaacatccaaaggcacaagttgtccgaggaaaggcacggagaggaagacgaagatctgcagagaaacaaagagagagaggaaagggcgagaggggcagaggtcgtgcccgtgaaccaatgataagaggcagggatattgacaatgaacaatttcaaaatgctgaattccaaagtgatcaaagatttggaagaaggccagaacaaagggaccccagacatccagttgttgacagacaagttgaagaaactcctccttttagggataattggagtagtgaaagggggaaaggtagagggaatgatcaatccaggcctggaatgggtggcccagggaggccacctgtgagagacaggctagctcctaaagattttagaggtggtgaaagtccaatgcataatcgtgatgaatttattagggcaggaagcccaggaatgcatgaaaagagatcaaggggtattggacaggacaggagaagagttgaaaatgtggaacattttgagccacatgttagtgggccagaaatgcgacaagatcccgagtttcgtttaagagaggaaatgcaaagagggcttgatccaagagagcgtaaccatcctccagttccattccacgatgaccccagagatcagcctgtgggcgaacctctactaaagaaaccaagacctttgctttcagatgttgagatcaatgaactacgaaacaaaaagggagcatcccccaacacaggaagaatgacaccaccacctgttcttcaagaaggtttcccaatccatccttttgatagaccaattggagaacccatggatgtgcatccacatcctcttcatgctgagcacccattccctcgtgaacatggctttcaccagaaccttggtcctccaggctctggcatgccaggggaatttagacctcatacaccccccatgcagcaacaccctggagagtgggctcctggttttgaaattccacgagagctcatgttggatcgccagaatgaaatcatgattcaggctgaaagacgtcttcaagcaggtgacctaactattgagcagcatcatgatttggtggataaacttgaacagttgtacgagcttcagcgacatcctgacccaatgaggcttcctccacaggatgcaaggctactgccgcatcctgaacacgagcctagacacatgtggccttcaagggtggaagaacctccattccgaccagggggacctatggacatgcaacgaccttcagcagatgctggtccaggaagaccaatgccgcaaaggtttgatggtccttcagagcacccaagaatgccattccaaggtcctatggaatctcaaggtcccatgatgaggaacgatggccccagatttgagcccaatgagccagaaatgagaagacgtaatgaggacttcagggggccacctccaatggggcaaccaccgatggaacttgatcatcacttacatgcaagacctttggcaattgggcctcctcccgtgagagcagagaggccatttgaaggcaatccaaggatggatggtggtccaaatgcttttgtacctggaagacctgttcctagacatcctaccagtcatgaaaatagtcctggctcacttgtcacaccaagtacaccaccaagaccagacaaaggtccagaagcaaatcctcctcacacaccaaacaccatgatggaaaagaagtctgtagatgatctgttccgcagactaatgcaagtggggattatcaaggtgaccgctgaacctggcaatgaatctccacggcatgcaccttcaccgggacccccacaggctgagattcaaaagccccaacccctccctgtgctgcctatttccttaccaggtcttactctaccagctgcagccatgcccaagaaagagcctgccaagaaagtaaaacccatccctgagattaaacttgtacctgaagagctgaaaaggcgtcatgatggtgtaataagcactctatatgatggaacacagtgttcttcctgtgggctgcggtttccaggtgaagctgcaaagatctaccgtgaacacttggactggcatttccgtaagaatcgccgagagaaggatggtaggagagtggcacacaaacagtggttcttcactgtaaaggactggttgaattatgaggagatttctgatccagaagagagagcacgtagctcgttctttgatgtcaatatgggggcagttgattctcctgatcctctgaaggagaccaaggaagtagtcggagagggaagctgtcctgtgctaagtggggacacagaagctgaagcggaatgtgacatttgttgcgagaagtttgaacagttctgggaagagaccaatgaggagtggcattataaggcggctgtgcgcattgatggcaagacttaccattatctgtgctaccaagatgtaaaagagaaccaaatgcagacagaagaggatgataacgaagaagagaaagatgaagagaaaatggacacaagtgtagaagaaaaatcgcctgcaaaggaggaagctaaaacggaggttaaagccgaggagggtagtgatggtgatgatgatgcgaaaatcccggaaacaaaggaatcgagcgaaaataagccgttagaaggagaaaagactgataaattagatgaagagtcttctgagaaagactcttgtaaggtagagggcgtggttaatgtgtctagtaatgctgttgaaaataaagaaaatgaaacagagggtgatgataaatag

Transcript

evm.model.Ap5.2353

GCCCTAATGGAGTCTGGAGAAGAAGCTATTTGTGAGGAGTATGAATCCTCTCTTGAAGACTTATCATTTAATTCTAAACCACTTATAAATGTGCTCACAATGTTGGCGGAAGAAAACAAACAGTATGCATTGAGTATAACACAGCTTATTGCAAATCGTATCTACCAGGTGCCACAGCAAACAAAACTGCCATCGCTTTATCTGCTTGACTCCATCGTTAAGAATGTTGGAGGAGAGTACCTTCATCTTGTTGCACAAATCATGGAAAAGACATTTACTTGTGTATTTGAAAAGGCAGATGAGAAGACTCGTCGTGACCTGTTCAAGTTACGGAACACCTGGGCGCAGTATTTTCCTCCAAAGATGTTGTATGATTTGGATGTTGCTGTGAACAAGCATGACCCTGGCTGGCCCATTCCCCCTGCACCACCACCAAGCCCGTCTATACACATCAACCCCAAGTTTCTGAAAAAGGCAGAGAGTGCTGGCACTGTTGCCTCATTAACTGCAGGCATATCAACACCTCAGGAACAGATGGTGGTGGAGGATCACCAACAACGCTTGGACGAGCTTGAGAGACTACAGGAGGAGCAGCTGAAGCTAACAGAACTTGAGATCCAGGAGCATCAAATGAAGAGAGATCTTTTACTTAAGAAACAGCAGCAAGAACGAAAACTCCTTCTACAGCAGCAACAGCAACATATACTTCACTTGCGACTGCAGCCAGAAGATCAAGACTCTACACTATCCAATGGGCCTCCAGTTCGTGCCCCAGTGTCAACCAAAGCAGAGTCCACCAAGAGTGTTCAAGGGACATCAAGTAGTCGAGATCCACGTCTTCGTCGAAGCGAGCTAGAATCTGATCATCTCCAAGAGCCAATGCCTTTGGAAGTAAGGAAACCTGATTTTGTCCAAGAAAGGAAGTTGATTGATACCCAAGGAAGTTTACCGATAAGTGCTAGACATGGACATGTTCCCTCTGTTACAGGGGAAGTCCAGTTTGAGCAGACATTAGGAAGGCCACCAGAACAATTTTTTGATCCCTTACAGCCAGACTTGGAAGCTGCCCAAACCCAAGAGATCAGAAGTCTGCAACACATGGCTCGGGTGCAGAATCCAGTAGAAAATGTCAGCAGGAACAATCTAGACAGAGAAGTCACAGGCAGCCCAAAGTATGGTGATCTGCAAAGGCCATCAAAGCCTAAACAAAACCATAAAAGGCGAAATTCCGGTGACTGGTCAAGTCCCCCTCCAAGTCATGAAAACAGGCCTGATGAACATCCAAAGGCACAAGTTGTCCGAGGAAAGGCACGGAGAGGAAGACGAAGATCTGCAGAGAAACAAAGAGAGAGAGGAAAGGGCGAGAGGGGCAGAGGTCGTGCCCGTGAACCAATGATAAGAGGCAGGGATATTGACAATGAACAATTTCAAAATGCTGAATTCCAAAGTGATCAAAGATTTGGAAGAAGGCCAGAACAAAGGGACCCCAGACATCCAGTTGTTGACAGACAAGTTGAAGAAACTCCTCCTTTTAGGGATAATTGGAGTAGTGAAAGGGGGAAAGGTAGAGGGAATGATCAATCCAGGCCTGGAATGGGTGGCCCAGGGAGGCCACCTGTGAGAGACAGGCTAGCTCCTAAAGATTTTAGAGGTGGTGAAAGTCCAATGCATAATCGTGATGAATTTATTAGGGCAGGAAGCCCAGGAATGCATGAAAAGAGATCAAGGGGTATTGGACAGGACAGGAGAAGAGTTGAAAATGTGGAACATTTTGAGCCACATGTTAGTGGGCCAGAAATGCGACAAGATCCCGAGTTTCGTTTAAGAGAGGAAATGCAAAGAGGGCTTGATCCAAGAGAGCGTAACCATCCTCCAGTTCCATTCCACGATGACCCCAGAGATCAGCCTGTGGGCGAACCTCTACTAAAGAAACCAAGACCTTTGCTTTCAGATGTTGAGATCAATGAACTACGAAACAAAAAGGGAGCATCCCCCAACACAGGAAGAATGACACCACCACCTGTTCTTCAAGAAGGTTTCCCAATCCATCCTTTTGATAGACCAATTGGAGAACCCATGGATGTGCATCCACATCCTCTTCATGCTGAGCACCCATTCCCTCGTGAACATGGCTTTCACCAGAACCTTGGTCCTCCAGGCTCTGGCATGCCAGGGGAATTTAGACCTCATACACCCCCCATGCAGCAACACCCTGGAGAGTGGGCTCCTGGTTTTGAAATTCCACGAGAGCTCATGTTGGATCGCCAGAATGAAATCATGATTCAGGCTGAAAGACGTCTTCAAGCAGGTGACCTAACTATTGAGCAGCATCATGATTTGGTGGATAAACTTGAACAGTTGTACGAGCTTCAGCGACATCCTGACCCAATGAGGCTTCCTCCACAGGATGCAAGGCTACTGCCGCATCCTGAACACGAGCCTAGACACATGTGGCCTTCAAGGGTGGAAGAACCTCCATTCCGACCAGGGGGACCTATGGACATGCAACGACCTTCAGCAGATGCTGGTCCAGGAAGACCAATGCCGCAAAGGTTTGATGGTCCTTCAGAGCACCCAAGAATGCCATTCCAAGGTCCTATGGAATCTCAAGGTCCCATGATGAGGAACGATGGCCCCAGATTTGAGCCCAATGAGCCAGAAATGAGAAGACGTAATGAGGACTTCAGGGGGCCACCTCCAATGGGGCAACCACCGATGGAACTTGATCATCACTTACATGCAAGACCTTTGGCAATTGGGCCTCCTCCCGTGAGAGCAGAGAGGCCATTTGAAGGCAATCCAAGGATGGATGGTGGTCCAAATGCTTTTGTACCTGGAAGACCTGTTCCTAGACATCCTACCAGTCATGAAAATAGTCCTGGCTCACTTGTCACACCAAGTACACCACCAAGACCAGACAAAGGTCCAGAAGCAAATCCTCCTCACACACCAAACACCATGATGGAAAAGAAGTCTGTAGATGATCTGTTCCGCAGACTAATGCAAGTGGGGATTATCAAGGTGACCGCTGAACCTGGCAATGAATCTCCACGGCATGCACCTTCACCGGGACCCCCACAGGCTGAGATTCAAAAGCCCCAACCCCTCCCTGTGCTGCCTATTTCCTTACCAGGTCTTACTCTACCAGCTGCAGCCATGCCCAAGAAAGAGCCTGCCAAGAAAGTAAAACCCATCCCTGAGATTAAACTTGTACCTGAAGAGCTGAAAAGGCGTCATGATGGTGTAATAAGCACTCTATATGATGGAACACAGTGTTCTTCCTGTGGGCTGCGGTTTCCAGGTGAAGCTGCAAAGATCTACCGTGAACACTTGGACTGGCATTTCCGTAAGAATCGCCGAGAGAAGGATGGTAGGAGAGTGGCACACAAACAGTGGTTCTTCACTGTAAAGGACTGGTTGAATTATGAGGAGATTTCTGATCCAGAAGAGAGAGCACGTAGCTCGTTCTTTGATGTCAATATGGGGGCAGTTGATTCTCCTGATCCTCTGAAGGAGACCAAGGAAGTAGTCGGAGAGGGAAGCTGTCCTGTGCTAAGTGGGGACACAGAAGCTGAAGCGGAATGTGACATTTGTTGCGAGAAGTTTGAACAGTTCTGGGAAGAGACCAATGAGGAGTGGCATTATAAGGCGGCTGTGCGCATTGATGGCAAGACTTACCATTATCTGTGCTACCAAGATGTAAAAGAGAACCAAATGCAGACAGAAGAGGATGATAACGAAGAAGAGAAAGATGAAGAGAAAATGGACACAAGTGTAGAAGAAAAATCGCCTGCAAAGGAGGAAGCTAAAACGGAGGTTAAAGCCGAGGAGGGTAGTGATGGTGATGATGATGCGAAAATCCCGGAAACAAAGGAATCGAGCGAAAATAAGCCGTTAGAAGGAGAAAAGACTGATAAATTAGATGAAGAGTCTTCTGAGAAAGACTCTTGTAAGGTAGAGGGCGTGGTTAATGTGTCTAGTAATGCTGTTGAAAATAAAGAAAATGAAACAGAGGGTGATGATAAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G3X9Z4	Pre-mRNA cleavage complex 2 protein Pcf11 OS=Mus musculus OX=10090 GN=Pcf11 PE=2 SV=1
O94913	Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens OX=9606 GN=PCF11 PE=1 SV=3
Q0WPF2	Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana OX=3702 GN=PCFS4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04818 all species →	CID	CID domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR006569 all species →	Domain	CID domain	Interproscan
IPR047415 all species →	Domain	Pcf11, CID domain	Interproscan
IPR045154 all species →	Family	Protein PCF11-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15921 all species →	PRE-MRNA CLEAVAGE COMPLEX II	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005849 all species →	Cellular Component	mRNA cleavage factor complex	Interproscan
GO:0006369 all species →	Biological Process	termination of RNA polymerase II transcription	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0031124 all species →	Biological Process	mRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14400	PCF11; pre-mRNA cleavage complex 2 protein Pcf11	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.