Genomic Location: Ap5:24560922...24575067
NR annotation: XP_020629614.1, pre-mRNA cleavage complex 2 protein Pcf11-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap5.2353.1.5f15e6a5 |
| Transcript |
| evm.model.Ap5.2353.1.5f15e6a5 |
| Protein |
| evm.model.Ap5.2353.1.5f15e6a5 |
| UniProt accession | Description |
|---|---|
| G3X9Z4 | Pre-mRNA cleavage complex 2 protein Pcf11 OS=Mus musculus OX=10090 GN=Pcf11 PE=2 SV=1 |
| O94913 | Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens OX=9606 GN=PCF11 PE=1 SV=3 |
| Q0WPF2 | Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana OX=3702 GN=PCFS4 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004593 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04818 all species → | CID | CID domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006569 all species → | Domain | CID domain | Interproscan |
| IPR008942 all species → | Homologous_superfamily | ENTH/VHS | Interproscan |
| IPR047415 all species → | Domain | Pcf11, CID domain | Interproscan |
| IPR045154 all species → | Family | Protein PCF11-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15921 all species → | PRE-MRNA CLEAVAGE COMPLEX II | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000993 all species → | Molecular Function | RNA polymerase II complex binding | Interproscan |
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005849 all species → | Cellular Component | mRNA cleavage factor complex | Interproscan |
| GO:0006369 all species → | Biological Process | termination of RNA polymerase II transcription | Interproscan |
| GO:0006378 all species → | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| GO:0031124 all species → | Biological Process | mRNA 3'-end processing | Interproscan |
evm.model.Ap5.2353.1.5f15e6a5.Transcript abundance of evm.model.Ap5.2353.1.5f15e6a5 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
