Detailed information of evm.model.Ap5.2388 in Astrangia poculata

Genomic Location: Ap5:24871609...24875955
NR annotation: CAH3046116.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3UY23Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog OS=Mus musculus OX=10090 GN=Fdxacb1 PE=2 SV=2
Q9BRP7Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens OX=9606 GN=FDXACB1 PE=1 SV=3
Q94K73Phenylalanine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g58140 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003851 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10354
all species →		BMT5-likerRNA (uridine-N3-)-methyltransferase BTM5-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR036690
all species →		Homologous_superfamilyFerrodoxin-fold anticodon-binding domain superfamilyInterproscan
IPR005121
all species →		DomainFerrodoxin-fold anticodon-binding domainInterproscan
IPR019446
all species →		Domain25S rRNA (uridine-N(3))-methyltransferase BMT5-likeInterproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11538
all species →		PHENYLALANYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0070042
all species →		Molecular FunctionrRNA (uridine-N3-)-methyltransferase activityInterproscan
GO:0070475
all species →		Biological ProcessrRNA base methylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap5.2388.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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