Genomic Location: Ap5:312417...313851
NR annotation: XP_020619039.1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap5.24 |
| Transcript |
| evm.model.Ap5.24 |
| Protein |
| evm.model.Ap5.24 |
| UniProt accession | Description |
|---|---|
| Q02370 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus OX=9913 GN=NDUFA2 PE=1 SV=2 |
| O43678 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens OX=9606 GN=NDUFA2 PE=1 SV=3 |
| Q4R5E2 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis OX=9541 GN=NDUFA2 PE=3 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009839 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05047 all species → | L51_S25_CI-B8 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007741 all species → | Domain | Ribosomal protein/NADH dehydrogenase domain | Interproscan |
| IPR036249 all species → | Homologous_superfamily | Thioredoxin-like superfamily | Interproscan |
| IPR016464 all species → | Family | NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12878 all species → | NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005747 all species → | Cellular Component | obsolete mitochondrial respiratory chain complex I | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03946 | NDUFA2; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2 | - | Non-alcoholic fatty liver disease | ko04932 | deepkoala |
Transcript abundance of evm.model.Ap5.24 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
