Gene detail

Detailed information of evm.model.Ap5.2447 in Astrangia poculata

Genomic Location: Ap5:25400460...25404906
NR annotation: RMX50901.1, hypothetical protein pdam_00016117 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2447

atgggctttgcaggtctccttcttttatccttagctgttctgtgtgctttacagaactgtgattctaaatctttcacaatcgactacgaaaacgattgttttctaaaagatggacaaccatttcgttacatctctgggagctttcatttctttcgagttcctcgcttctactggaaagaccggctcatgaagatgaaagctggaggtttaaacactgtacaaacttacatcgcttggaatgttcacgaaccagttcaagggaaatacaactttgagggagatgcagatattgtcagtttcatcgagctcgctaacagccttggtcttctagttatcgtcagagcaggtccttatatttgtgccgaatgggacttcgggggatttccagcctggctgttaagtgacccatctatcgccctacgatcatctaaagacaagcggttcctcgatgctgtagactcctggatggctgtagtgcttcccaagctgacgccattgctctatgtcaatgggggacccatcatatcagtccaagttgagaatgaatacggcagcttctttgtttgcgatcacgattacatgacgcatctagagcagttatttcgcaaacatttaggcgatgacgtgatccttttcacagttgacagcgattggcagttcctattttcatgtggcacaataccctccctctatgcaacagttgattttggaccggaaacagaccctgaaagtgcttttggagtcatgcgcaaatttactcctaagggccccctggttaactcggagttctacactggctggattgaccactggggcgaaaagcatcagacgaaagatgctgcattggtcgcaaaatcacttgacaagatcttgtccatgaatgcgtctgtcaacttctacatgtacgagggaggaactaactttggcttcatgagtggtgcaaattataacttgcttctgtacaaacccatacctaccagttatgattacgatgcacccttaacggaagctggcgatactggcacgaaatttcacattctgcgggagacgatttccaagcacgagaaaataccagtagttcccatccctgctaacacaacaaagtttgcctatggtaaagttcagatgtcccgactgtcgaccttccttgatgctgtaccaaagcttgctgctccccgcggacctgtgaatgcatcgcttcctttaactatggaacagatcggacagagctatgggtttgttctctacagaacggagatcccagagacgttttctcaatcaagtgttaccttgacgatagcaagcttagtgcgtgaccgcgccatcatctatgtaggaaaagtacgccaggcaacgatgtttcgccggtcaggacagtccagtgtgactcttcgcattggaagcttcctacagctggatatactggttgaaaatacaggcagagttaacgctggcccaagaatggttgaccccaaaggaattgttggtaatgtgacaatcaatggcacccctctgaagaattggcagatatatcccataaacctcgacaatgttgtgtcaaaaccagcacatctcgaattgtcttctctccttcgaggtgacgacaaaaccgatcttactgcatcggataacagcttttctccttcttttttccatggagaaattccgctaactgcacttgggacctctacatctgacacctttcttcaactaccaggatggaataaaggccaagcatttgtcaatggttttaacttgggccgctattggcctgtagttggtccacaggagacattgtttgtgccagcaaacgtgctctcactaaatccgagctctatcagtgtagtgttacttgagctggatggtgctccatgtgaaaatccaacaacgtgttttgttgaatttgttgcaaccccttccataaatgggcctgtacacccaatagtgaagaggtacaaaccgacaaacatgaatataagctgctttgacgaacgactgagcagtgcggcatccatcgttctctcactgtggttctccttgtctggtttagcagctgtcattggaaatgcagtggtgttgtggttgttctacagaaacgagtctttacaaacaatttccaaccgatttctagcttcgttgtccgtagcagactttttagtagggcttgtcatagatccgacctggttggccatgagatctctgattcaaccaccagaaactcatactatgaacaaagttatggacatgctttggattcacacaactgccgctacagtggttaacgtatgttgtgtttccgtagaccgatttatcgccattcgctttcctttccgctatcaggacattataaccaagaaaagatgttacttagtgattacagtggtgtggttaatctcgctctttctccctctcccggtgatatttgtagatgtcgaaaacctgtggctgattttatcagttcttacattttttattccaatatctttggtcactttctgttatgtttggattttcaaagcagcaagaaaacaagctgcaacaataagacgggaaaatcagcccactaacaacctcaatgagccacctcatgctatacaaaattataaagccatcaaaaccatcggttttgtgttgggtgtcttcattgtttcatggatgccgtgtttggttgtttctgttgtgcatcagtttgaagcaaatgatgagtgtgctgatcacatattgtactctgtagtgtggccctggattgaggcaatcgcgtttacgtcatcggcgatcaacccgtggatatactacttccgtaatagcgagtttcgcgaagctttccgccgaaggtttcgtttgttagcctcggacattacgccagaacgttccccggaacatgctaggaaccaggggctgcaaatagcgtaa

Transcript

evm.model.Ap5.2447

ATGGGCTTTGCAGGTCTCCTTCTTTTATCCTTAGCTGTTCTGTGTGCTTTACAGAACTGTGATTCTAAATCTTTCACAATCGACTACGAAAACGATTGTTTTCTAAAAGATGGACAACCATTTCGTTACATCTCTGGGAGCTTTCATTTCTTTCGAGTTCCTCGCTTCTACTGGAAAGACCGGCTCATGAAGATGAAAGCTGGAGGTTTAAACACTGTACAAACTTACATCGCTTGGAATGTTCACGAACCAGTTCAAGGGAAATACAACTTTGAGGGAGATGCAGATATTGTCAGTTTCATCGAGCTCGCTAACAGCCTTGGTCTTCTAGTTATCGTCAGAGCAGGTCCTTATATTTGTGCCGAATGGGACTTCGGGGGATTTCCAGCCTGGCTGTTAAGTGACCCATCTATCGCCCTACGATCATCTAAAGACAAGCGGTTCCTCGATGCTGTAGACTCCTGGATGGCTGTAGTGCTTCCCAAGCTGACGCCATTGCTCTATGTCAATGGGGGACCCATCATATCAGTCCAAGTTGAGAATGAATACGGCAGCTTCTTTGTTTGCGATCACGATTACATGACGCATCTAGAGCAGTTATTTCGCAAACATTTAGGCGATGACGTGATCCTTTTCACAGTTGACAGCGATTGGCAGTTCCTATTTTCATGTGGCACAATACCCTCCCTCTATGCAACAGTTGATTTTGGACCGGAAACAGACCCTGAAAGTGCTTTTGGAGTCATGCGCAAATTTACTCCTAAGGGCCCCCTGGTTAACTCGGAGTTCTACACTGGCTGGATTGACCACTGGGGCGAAAAGCATCAGACGAAAGATGCTGCATTGGTCGCAAAATCACTTGACAAGATCTTGTCCATGAATGCGTCTGTCAACTTCTACATGTACGAGGGAGGAACTAACTTTGGCTTCATGAGTGGTGCAAATTATAACTTGCTTCTGTACAAACCCATACCTACCAGTTATGATTACGATGCACCCTTAACGGAAGCTGGCGATACTGGCACGAAATTTCACATTCTGCGGGAGACGATTTCCAAGCACGAGAAAATACCAGTAGTTCCCATCCCTGCTAACACAACAAAGTTTGCCTATGGTAAAGTTCAGATGTCCCGACTGTCGACCTTCCTTGATGCTGTACCAAAGCTTGCTGCTCCCCGCGGACCTGTGAATGCATCGCTTCCTTTAACTATGGAACAGATCGGACAGAGCTATGGGTTTGTTCTCTACAGAACGGAGATCCCAGAGACGTTTTCTCAATCAAGTGTTACCTTGACGATAGCAAGCTTAGTGCGTGACCGCGCCATCATCTATGTAGGAAAAGTACGCCAGGCAACGATGTTTCGCCGGTCAGGACAGTCCAGTGTGACTCTTCGCATTGGAAGCTTCCTACAGCTGGATATACTGGTTGAAAATACAGGCAGAGTTAACGCTGGCCCAAGAATGGTTGACCCCAAAGGAATTGTTGGTAATGTGACAATCAATGGCACCCCTCTGAAGAATTGGCAGATATATCCCATAAACCTCGACAATGTTGTGTCAAAACCAGCACATCTCGAATTGTCTTCTCTCCTTCGAGGTGACGACAAAACCGATCTTACTGCATCGGATAACAGCTTTTCTCCTTCTTTTTTCCATGGAGAAATTCCGCTAACTGCACTTGGGACCTCTACATCTGACACCTTTCTTCAACTACCAGGATGGAATAAAGGCCAAGCATTTGTCAATGGTTTTAACTTGGGCCGCTATTGGCCTGTAGTTGGTCCACAGGAGACATTGTTTGTGCCAGCAAACGTGCTCTCACTAAATCCGAGCTCTATCAGTGTAGTGTTACTTGAGCTGGATGGTGCTCCATGTGAAAATCCAACAACGTGTTTTGTTGAATTTGTTGCAACCCCTTCCATAAATGGGCCTGTACACCCAATAGTGAAGAGGTACAAACCGACAAACATGAATATAAGCTGCTTTGACGAACGACTGAGCAGTGCGGCATCCATCGTTCTCTCACTGTGGTTCTCCTTGTCTGGTTTAGCAGCTGTCATTGGAAATGCAGTGGTGTTGTGGTTGTTCTACAGAAACGAGTCTTTACAAACAATTTCCAACCGATTTCTAGCTTCGTTGTCCGTAGCAGACTTTTTAGTAGGGCTTGTCATAGATCCGACCTGGTTGGCCATGAGATCTCTGATTCAACCACCAGAAACTCATACTATGAACAAAGTTATGGACATGCTTTGGATTCACACAACTGCCGCTACAGTGGTTAACGTATGTTGTGTTTCCGTAGACCGATTTATCGCCATTCGCTTTCCTTTCCGCTATCAGGACATTATAACCAAGAAAAGATGTTACTTAGTGATTACAGTGGTGTGGTTAATCTCGCTCTTTCTCCCTCTCCCGGTGATATTTGTAGATGTCGAAAACCTGTGGCTGATTTTATCAGTTCTTACATTTTTTATTCCAATATCTTTGGTCACTTTCTGTTATGTTTGGATTTTCAAAGCAGCAAGAAAACAAGCTGCAACAATAAGACGGGAAAATCAGCCCACTAACAACCTCAATGAGCCACCTCATGCTATACAAAATTATAAAGCCATCAAAACCATCGGTTTTGTGTTGGGTGTCTTCATTGTTTCATGGATGCCGTGTTTGGTTGTTTCTGTTGTGCATCAGTTTGAAGCAAATGATGAGTGTGCTGATCACATATTGTACTCTGTAGTGTGGCCCTGGATTGAGGCAATCGCGTTTACGTCATCGGCGATCAACCCGTGGATATACTACTTCCGTAATAGCGAGTTTCGCGAAGCTTTCCGCCGAAGGTTTCGTTTGTTAGCCTCGGACATTACGCCAGAACGTTCCCCGGAACATGCTAGGAACCAGGGGCTGCAAATAGCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23780	Beta-galactosidase OS=Mus musculus OX=10090 GN=Glb1 PE=1 SV=1
Q9TRY9	Beta-galactosidase OS=Canis lupus familiaris OX=9615 GN=GLB1 PE=1 SV=3
Q58D55	Beta-galactosidase OS=Bos taurus OX=9913 GN=GLB1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000517 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01301 all species →	Glyco_hydro_35	Glycosyl hydrolases family 35	Domain	Interproscan
PF21317 all species →	BetaGal_ABD_1	Beta-galactosidase, first all-beta domain	Domain	Interproscan
PF21467 all species →	BetaGal_gal-bd	Beta-galactosidase, galactose-binding domain	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031330 all species →	Domain	Glycoside hydrolase 35, catalytic domain	Interproscan
IPR001944 all species →	Family	Glycoside hydrolase, family 35	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR048912 all species →	Domain	Beta-galactosidase 1-like , first all-beta domain	Interproscan
IPR048913 all species →	Domain	Beta-galactosidase, galactose-binding domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR019801 all species →	Conserved_site	Glycoside hydrolase, family 35, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23421 all species →	BETA-GALACTOSIDASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004565 all species →	Molecular Function	beta-galactosidase activity	Interproscan
GO:0005773 all species →	Cellular Component	vacuole	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12309	GLB1, ELNR1; beta-galactosidase	EC:3.2.1.23	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.