Detailed information of evm.model.Ap5.2456 in Astrangia poculata

Genomic Location: Ap5:25508613...25511135
NR annotation: XP_020612021.1, uncharacterized protein LOC110050444 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000392 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02995
all species →		DUF229Protein of unknown function (DUF229)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017850
all species →		Homologous_superfamilyAlkaline-phosphatase-like, core domain superfamilyInterproscan
IPR004245
all species →		FamilyProtein of unknown function DUF229Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10974
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap5.2456.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap5.2456 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
31TPM > 0
4Conditions
1,980.7Max TPM
239.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 8 157.69 527.96
whole organism · heat control 12 8 171.26 480.30
whole organism · cold challenge 12 5 74.76 328.93
whole organism · heat challenge 11 10 598.05 1,980.70

Per sample · hover a bar for the full sample record

Show the sample table (49 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR10674715 whole organism · cold control whole organism not recorded cold control SRP237293 527.96
SRR10674733 whole organism · cold control whole organism not recorded cold control SRP237293 407.42
SRR10674747 whole organism · cold control whole organism not recorded cold control SRP237293 322.01
SRR10674734 whole organism · cold control whole organism not recorded cold control SRP237293 288.88
SRR10674746 whole organism · cold control whole organism not recorded cold control SRP237293 182.63
SRR10674739 whole organism · cold control whole organism not recorded cold control SRP237293 169.86
SRR10674736 whole organism · cold control whole organism not recorded cold control SRP237293 163.23
SRR10674737 whole organism · cold control whole organism not recorded cold control SRP237293 145.62
SRR10674714 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674724 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674735 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674743 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674748 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674750 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674718 whole organism · heat control whole organism not recorded heat control SRP237293 480.30
SRR10674707 whole organism · heat control whole organism not recorded heat control SRP237293 415.99
SRR10674708 whole organism · heat control whole organism not recorded heat control SRP237293 294.78
SRR10674721 whole organism · heat control whole organism not recorded heat control SRP237293 248.68
SRR10674725 whole organism · heat control whole organism not recorded heat control SRP237293 186.45
SRR10674706 whole organism · heat control whole organism not recorded heat control SRP237293 176.29
SRR10674741 whole organism · heat control whole organism not recorded heat control SRP237293 166.45
SRR10674753 whole organism · heat control whole organism not recorded heat control SRP237293 86.20
SRR10674717 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674720 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674731 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674752 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674744 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 328.93
SRR10674740 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 171.84
SRR10674732 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 162.27
SRR10674749 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 117.71
SRR10674722 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 116.33
SRR10674711 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674712 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674713 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674723 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674730 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674738 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674745 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674716 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 1,980.70
SRR10674719 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 1,317.11
SRR10674742 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 937.82
SRR10674727 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 476.52
SRR10674728 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 397.25
SRR10674726 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 384.49
SRR10674729 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 380.31
SRR10674754 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 295.23
SRR10674710 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 209.59
SRR10674709 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 199.49
SRR10674751 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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