Gene detail

Detailed information of evm.model.Ap5.2577 in Astrangia poculata

Genomic Location: Ap5:26514936...26534978
NR annotation: XP_020604126.1, arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2577

atgataaagattggcaatgacaaagccaacctgcttctggagcacaaattacccgaggatgacaaaataagcccggaatctgactcctcagcaagacgcgagtttatctattctaaatactgggaaaagaagtactgcaaataccaccaagctttcggagacgcggacttcctaggaaagttcttacgggaaacagtagtgaccgaggacatcatgacaactatggaattgatttttaacaaagttgatgtgcgttacgttccttcggatgccgaggacgaaaaaacaccacttgaacttgctgaagaagctgggcaaactctccaagcggagctgcttcggcagaatggcggagaaggaggtaaactcgatcagtattcctgtgaggacctgtcagcgacagccaacagtgaggaactaaaaagtgcccgagccgttgatcaggcttcacaaagtattactgttgacatagtttatgagaaggaaggattcttatacaagaaggaagggaactggagaaaaagatggtttctgttgaaagacagaagcctgaagtacgccagagggcctcacgagaaggacgatcttgttacgattgatctccgaactgtgacgtcactggtgaaatgtcccaagggagagctgctgcagttggatattgttaccgttgataaaacacacagtctgaaggccgacacagaggaggaactagaggtctggtacttagctctgagaagcaaacaggtgtttggtgttttactaagtcagcaagaacttggttctgatggcattccgcatctggtggcaaaatgcctgcagtttgtcgaaacctatggtggtcttgagatggaaggagtttatcgagtgaatggcggccagttgaccatgaagaaactcagaacgtcctttgatcaagacgctcgcagcgtgctgctgactttggatgaatgcggtgttcatgacgtcaccggagtgctgaagcaatatctgcggcagctgcctgacccagtcatcccgggaagaatgtacaaacagttcattgcagcaggaatgaatcaagaccacaattccaggctgcagacgataaaagatctgatcaaccagcttcccaaagtgaaccatgacactctgaaagcaatcatcttccatttgaccaaggtggtgcagttagatatcgtaaataagatgaaattatctaatattgcgatgatttttggacccactctgatgtccaatgagaacactggtcgaatggacgatgcctcaatcaaccaagaattttcgattgtaggagatatgataacatattatcaatggctctttgatgttggtgacgaagaagtagagaaggacaggaaaatcaaaaatgcctcgcaaaagattagagatttgattgaacaaaaggaaaaatcccaaatttccgatggagaattcactttggatatttatgttaaagaaaagaacgacaacccttgtcgaccgaaggtttcttcagagatgacagcaggaaggctatgtgctgagattgtagcacagaaggggctatcacgtgacacggactgggttctctttgaagttttgaaaacggcgccatgggtgagcctagcctcgtcttattcagttcatttggcaatttgcgatgacaagactagtcctattagaaaacatctgcgtgagcgtgcgttccaagtcagagagaaagtcatggcctcggcaaactgggggagtggaaactacctgatagtcaaagagaattacatcgcagaacaaatcgccccatatgtcggctcgatgctgacaattgagggcaccttacacatccgggatcctaaaagagggagctggaaacagagtcacgtgtgcttgaagaatggttacatgtcggtcaacaaagagcgtgggtcgattttgaaagtcatcaagtcggacaaatctgattctgaacagtggccgcttcataaactgactctgtatgtgggcgtaccaaaggagtacgagaaagctaccaaaggagtaaacactagttgcggatttaccgtagtcgtgaaaacaggccaagaggatatcatcaggtatatgtgtgtaaaggacaaggctgatatgaatcgttggttggcatcaatacttaatatgaagcatcctgaaggcatctggtctgatccttctcagagagaaggcatctggtctgatccttctcagagagaagcgatggcgagatactccgttgttggtccaagggacacacatgaagaagatttacctgtatacctcgggagacagtcggttcaccttcgacgaaaaggctcctcaaagcacatcgtagaagaactcaaatttaaacagaggtccctaaaacgccctgtggacagaggccctccaacgtga

Transcript

evm.model.Ap5.2577

ATGATAAAGATTGGCAATGACAAAGCCAACCTGCTTCTGGAGCACAAATTACCCGAGGATGACAAAATAAGCCCGGAATCTGACTCCTCAGCAAGACGCGAGTTTATCTATTCTAAATACTGGGAAAAGAAGTACTGCAAATACCACCAAGCTTTCGGAGACGCGGACTTCCTAGGAAAGTTCTTACGGGAAACAGTAGTGACCGAGGACATCATGACAACTATGGAATTGATTTTTAACAAAGTTGATGTGCGTTACGTTCCTTCGGATGCCGAGGACGAAAAAACACCACTTGAACTTGCTGAAGAAGCTGGGCAAACTCTCCAAGCGGAGCTGCTTCGGCAGAATGGCGGAGAAGGAGGTAAACTCGATCAGTATTCCTGTGAGGACCTGTCAGCGACAGCCAACAGTGAGGAACTAAAAAGTGCCCGAGCCGTTGATCAGGCTTCACAAAGTATTACTGTTGACATAGTTTATGAGAAGGAAGGATTCTTATACAAGAAGGAAGGGAACTGGAGAAAAAGATGGTTTCTGTTGAAAGACAGAAGCCTGAAGTACGCCAGAGGGCCTCACGAGAAGGACGATCTTGTTACGATTGATCTCCGAACTGTGACGTCACTGGTGAAATGTCCCAAGGGAGAGCTGCTGCAGTTGGATATTGTTACCGTTGATAAAACACACAGTCTGAAGGCCGACACAGAGGAGGAACTAGAGGTCTGGTACTTAGCTCTGAGAAGCAAACAGGTGTTTGGTGTTTTACTAAGTCAGCAAGAACTTGGTTCTGATGGCATTCCGCATCTGGTGGCAAAATGCCTGCAGTTTGTCGAAACCTATGGTGGTCTTGAGATGGAAGGAGTTTATCGAGTGAATGGCGGCCAGTTGACCATGAAGAAACTCAGAACGTCCTTTGATCAAGACGCTCGCAGCGTGCTGCTGACTTTGGATGAATGCGGTGTTCATGACGTCACCGGAGTGCTGAAGCAATATCTGCGGCAGCTGCCTGACCCAGTCATCCCGGGAAGAATGTACAAACAGTTCATTGCAGCAGGAATGAATCAAGACCACAATTCCAGGCTGCAGACGATAAAAGATCTGATCAACCAGCTTCCCAAAGTGAACCATGACACTCTGAAAGCAATCATCTTCCATTTGACCAAGGTGGTGCAGTTAGATATCGTAAATAAGATGAAATTATCTAATATTGCGATGATTTTTGGACCCACTCTGATGTCCAATGAGAACACTGGTCGAATGGACGATGCCTCAATCAACCAAGAATTTTCGATTGTAGGAGATATGATAACATATTATCAATGGCTCTTTGATGTTGGTGACGAAGAAGTAGAGAAGGACAGGAAAATCAAAAATGCCTCGCAAAAGATTAGAGATTTGATTGAACAAAAGGAAAAATCCCAAATTTCCGATGGAGAATTCACTTTGGATATTTATGTTAAAGAAAAGAACGACAACCCTTGTCGACCGAAGGTTTCTTCAGAGATGACAGCAGGAAGGCTATGTGCTGAGATTGTAGCACAGAAGGGGCTATCACGTGACACGGACTGGGTTCTCTTTGAAGTTTTGAAAACGGCGCCATGGGTGAGCCTAGCCTCGTCTTATTCAGTTCATTTGGCAATTTGCGATGACAAGACTAGTCCTATTAGAAAACATCTGCGTGAGCGTGCGTTCCAAGTCAGAGAGAAAGTCATGGCCTCGGCAAACTGGGGGAGTGGAAACTACCTGATAGTCAAAGAGAATTACATCGCAGAACAAATCGCCCCATATGTCGGCTCGATGCTGACAATTGAGGGCACCTTACACATCCGGGATCCTAAAAGAGGGAGCTGGAAACAGAGTCACGTGTGCTTGAAGAATGGTTACATGTCGGTCAACAAAGAGCGTGGGTCGATTTTGAAAGTCATCAAGTCGGACAAATCTGATTCTGAACAGTGGCCGCTTCATAAACTGACTCTGTATGTGGGCGTACCAAAGGAGTACGAGAAAGCTACCAAAGGAGTAAACACTAGTTGCGGATTTACCGTAGTCGTGAAAACAGGCCAAGAGGATATCATCAGGTATATGTGTGTAAAGGACAAGGCTGATATGAATCGTTGGTTGGCATCAATACTTAATATGAAGCATCCTGAAGGCATCTGGTCTGATCCTTCTCAGAGAGAAGGCATCTGGTCTGATCCTTCTCAGAGAGAAGCGATGGCGAGATACTCCGTTGTTGGTCCAAGGGACACACATGAAGAAGATTTACCTGTATACCTCGGGAGACAGTCGGTTCACCTTCGACGAAAAGGCTCCTCAAAGCACATCGTAGAAGAACTCAAATTTAAACAGAGGTCCCTAAAACGCCCTGTGGACAGAGGCCCTCCAACGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q53QZ3	Rho GTPase-activating protein 15 OS=Homo sapiens OX=9606 GN=ARHGAP15 PE=1 SV=2
Q6TLK4	Rho GTPase-activating protein 27 OS=Rattus norvegicus OX=10116 GN=Arhgap27 PE=1 SV=1
A4IF90	Rho GTPase-activating protein 15 OS=Bos taurus OX=9913 GN=ARHGAP15 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002979 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR052227 all species →	Family	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45899 all species →	RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005547 all species →	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.2577.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.