Gene detail

Detailed information of evm.model.Ap5.2582 in Astrangia poculata

Genomic Location: Ap5:26577202...26579840
NR annotation: XP_020604120.1, DNA-directed RNA polymerases I and III subunit RPAC2-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XK67	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 GN=polr1d PE=3 SV=1
P0DPB6	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=POLR1D PE=1 SV=1
Q1RMG8	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=POLR1D PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009271 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13656 all species →	RNA_pol_L_2	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033898 all species →	Family	DNA-directed RNA polymerases I and III subunit AC19	Interproscan
IPR022905 all species →	Family	DNA-directed RNA polymerase subunit Rpo11-like	Interproscan
IPR036603 all species →	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan
IPR009025 all species →	Domain	DNA-directed RNA polymerase, RBP11-like dimerisation domain	Interproscan
IPR008193 all species →	Conserved_site	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13946 all species →	DNA-DIRECTED RNA POLYMERASE I,II,III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03020	RPAC2, RPC19, POLR1D; DNA-directed RNA polymerases I and III subunit RPAC2	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.