Gene detail

Detailed information of evm.model.Ap5.2590 in Astrangia poculata

Genomic Location: Ap5:26626366...26632961
NR annotation: XP_020604111.1, ankyrin repeat domain-containing protein 50-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2590

atggcgcggagtggcgacgatcgcaggccgttctactgccgagaatgggtctacgaaaaaatccacgcttgcctggaacgacgaaaacaacaagaagataccaagacgaagggagcttttattttaggagggccaggctccggcaaaacgacaattctacgtgaacttgtctctccaaccgccaaagaaggcgttcgggtggagttatcgaagaaggttgtggcccaccatttctgccaagcccagaatgcgctttctgtttctgtggcggacttcatttcgagtcttgcaaagcaacttgctgaagcagaagagctcaaagcgtacgctgccaaattaggcgaccctcaaattcaaaatcatctcaaaagtgaacagtgcattcgaaacccagatcgttcgttcaaagaagggattctgcttcctctaaatgcactacctccgcctcaagatatctttcttgttgtggtagacgccattgacgagtcgtacctacattctttcgattccggcgtttcatctggtagccgcactgttgccgaattgatggccacacatcacgatttactgccatcttggctatttctggttgtgagtgcaagaaagcaatcgaaaacggtgactaggatgtttacaggattccgaaagttcactctagacgatcttcggaaagcacatgtggtcaaagatattcaacagtacattttgaatcgcttggacgacgaaccaaggctgagaaaacatttgactcgtgaaacggccgaagcatttaatcagctccacattaaaagtaatggctgccttctctacctggaaaaattgttggatggggtcgtagatgaatttttcagcctggacgagacccaagacatcccaggaacactatctggtctgtacctgtggctttgtaacagattgttcacagaggagcaagttgaaaagattcgttcagtactgaatgttatattagctgctcaaaggccgctaaccgattctgaaatgtttcaagcagtctggacaaaagatactgaactaacaacagaaagcttcttggaaacacttgacctgatgtcacaccatattcttactgataataatggcgcaaagagtatttcgcatctatcttttgcggagtggcttttagacgtgaagcactgcactccaaagtttctatgcaatccggcagatgggcacgcaatgttagccttgcattacacgcaactctctcaaagacaacaactggcgcatccacaccaacttgcatttcatttgagtcgggcatctttcagagagtttttcacgcaagaccatcttgcattgtggcttctctggagtggaacacaaatcacagacatccagcttaacacagatgcactgaaccaagaggtcgcacaacttttgcttgatgctggtgctaaagttaacgaacttgaggaacaagcttccctacttccgtttgcaccagagacagaggattctatcaaggccttactagaaaagggaacgtctgtggatcgtgttgacagtgctggtcgaacattgttatgcaatgccgcatttaatggaaatgttgacgtagtacggcttctaattaaacatggtgcaaatgttaatttctcagacacttccgggcagtcaccgttaatgctagcatcaagacaaggacacagtgagattgtgtaccttcttgtgaactgtggtgggacagtagatcattgtgctgatgatggatgcaccgcgttaagggcggcagcctcaggagggcactctgacgttgtgtctattcttctggatcactcagctcaagtagacttggctgatgacgataaacgcactgctatgcgtggagcatcgtggggtggacacagtgatgttgttttgcagctcctccagcgtggagctgatccaaatcttgctgacaaagagggacggacagcacttatagctgctgcttacatgggtcataagaaagttgtagaaatactgcttgatcacaaagcagaaatcaatcacccagacaatgacggcagaactgctttagctgtgactgttctttgtgtttccgcaagtgagaatcatgaagctgttgtcgatcttcttctaaaccgtggcgctgaggtagaccatcctgattttgatggcattacaccgctttgtgtttcggctctggagggttactacaacgttgcaaagttgctaataaaagcaggggcagacactggccattgggacagaaatggacggacacctctgtttgcggcggcagctagtggtcattgtgacattgttgatttgcttctggcaacagcagaaggtcacaaagacgcagtcgtgtcactgctaggagcaaaccttgacatcaatgcacttgatccagatggaaggtctgcactgatgttagcagcacaggaaggtcatgttgatgtagtgtcggcacttattgagcatggtttacctattgaacaggcatcctctgacggacgcacagcacttcatttttcagccattgaaggacacgaggcgtgtgtccaacacctggtcagtcttggagcagacgtcaatcaccaggacagtcttggacggacacctctctttgccgtgtccattgaagagaacaagcagatggttgaacttttgttagatctcggaggttttgttgacagcaaggacatggaaggaaggactccgcttcaggcggtagcatggaagggtgcttacgagttagtggagcttttccttgacagaggtgcagaaataaatcatgccgattgtgaaggacgcactgctttgatgtcagcggcatggaagggtcatgtctctacagtacagttgttgattcagaaaggtgcaaaagttgacaagacatcacaggaaggtgccactgcactttgtattgcatctcaggaagggcatgacgaagttgtacagattttgcttgagcatgatgctaacatgaatcatgccgacaagctcggaagaactccaatgcaagttgcttatgaagctggtcatacaagggtaacaaaagtcctggaagcgttcagtgtgatgagaatgaatgacggaaacttcaccagtaccttgaagaggaagctgtcgtcagcgcaatcagagagcggcagtacagtgtcaaacagtagctttacagaaaagcctcaaagatcagacagcgtctcctcttcaaacagctctgaatctcctgctgcctcacgaaaggagcttggagtaccaggttcgacgcatcagcttggaccaaatggagaaattttagaagaaaggcgttactctgccagctttcgagatttgcactctgttcaaccaatcaaggagccgtggaattcagcctgcccaccatacacgtcagaattggatgtattaaaaccacccccttacacagaaaagcctgttaggacatcccttgttgaagacgatgtggttgcaagcaagccatctccaagaggtaaacacaagcagttttccttgcttcacaagatgaagcagaaagggaaaagtgcatttacttccagtggttctcatggtcaagagaaacgtggaaaggtgacaggcaagcgtgggtttttctctggcatcaagcagctaggtgcaagttcatcttatagtgctagttcatcgaaatcaagagaaggaaaaacggcaaactcaaaaggctcaaatgagtctttagaaacaaagatataa

Transcript

evm.model.Ap5.2590

ATGGCGCGGAGTGGCGACGATCGCAGGCCGTTCTACTGCCGAGAATGGGTCTACGAAAAAATCCACGCTTGCCTGGAACGACGAAAACAACAAGAAGATACCAAGACGAAGGGAGCTTTTATTTTAGGAGGGCCAGGCTCCGGCAAAACGACAATTCTACGTGAACTTGTCTCTCCAACCGCCAAAGAAGGCGTTCGGGTGGAGTTATCGAAGAAGGTTGTGGCCCACCATTTCTGCCAAGCCCAGAATGCGCTTTCTGTTTCTGTGGCGGACTTCATTTCGAGTCTTGCAAAGCAACTTGCTGAAGCAGAAGAGCTCAAAGCGTACGCTGCCAAATTAGGCGACCCTCAAATTCAAAATCATCTCAAAAGTGAACAGTGCATTCGAAACCCAGATCGTTCGTTCAAAGAAGGGATTCTGCTTCCTCTAAATGCACTACCTCCGCCTCAAGATATCTTTCTTGTTGTGGTAGACGCCATTGACGAGTCGTACCTACATTCTTTCGATTCCGGCGTTTCATCTGGTAGCCGCACTGTTGCCGAATTGATGGCCACACATCACGATTTACTGCCATCTTGGCTATTTCTGGTTGTGAGTGCAAGAAAGCAATCGAAAACGGTGACTAGGATGTTTACAGGATTCCGAAAGTTCACTCTAGACGATCTTCGGAAAGCACATGTGGTCAAAGATATTCAACAGTACATTTTGAATCGCTTGGACGACGAACCAAGGCTGAGAAAACATTTGACTCGTGAAACGGCCGAAGCATTTAATCAGCTCCACATTAAAAGTAATGGCTGCCTTCTCTACCTGGAAAAATTGTTGGATGGGGTCGTAGATGAATTTTTCAGCCTGGACGAGACCCAAGACATCCCAGGAACACTATCTGGTCTGTACCTGTGGCTTTGTAACAGATTGTTCACAGAGGAGCAAGTTGAAAAGATTCGTTCAGTACTGAATGTTATATTAGCTGCTCAAAGGCCGCTAACCGATTCTGAAATGTTTCAAGCAGTCTGGACAAAAGATACTGAACTAACAACAGAAAGCTTCTTGGAAACACTTGACCTGATGTCACACCATATTCTTACTGATAATAATGGCGCAAAGAGTATTTCGCATCTATCTTTTGCGGAGTGGCTTTTAGACGTGAAGCACTGCACTCCAAAGTTTCTATGCAATCCGGCAGATGGGCACGCAATGTTAGCCTTGCATTACACGCAACTCTCTCAAAGACAACAACTGGCGCATCCACACCAACTTGCATTTCATTTGAGTCGGGCATCTTTCAGAGAGTTTTTCACGCAAGACCATCTTGCATTGTGGCTTCTCTGGAGTGGAACACAAATCACAGACATCCAGCTTAACACAGATGCACTGAACCAAGAGGTCGCACAACTTTTGCTTGATGCTGGTGCTAAAGTTAACGAACTTGAGGAACAAGCTTCCCTACTTCCGTTTGCACCAGAGACAGAGGATTCTATCAAGGCCTTACTAGAAAAGGGAACGTCTGTGGATCGTGTTGACAGTGCTGGTCGAACATTGTTATGCAATGCCGCATTTAATGGAAATGTTGACGTAGTACGGCTTCTAATTAAACATGGTGCAAATGTTAATTTCTCAGACACTTCCGGGCAGTCACCGTTAATGCTAGCATCAAGACAAGGACACAGTGAGATTGTGTACCTTCTTGTGAACTGTGGTGGGACAGTAGATCATTGTGCTGATGATGGATGCACCGCGTTAAGGGCGGCAGCCTCAGGAGGGCACTCTGACGTTGTGTCTATTCTTCTGGATCACTCAGCTCAAGTAGACTTGGCTGATGACGATAAACGCACTGCTATGCGTGGAGCATCGTGGGGTGGACACAGTGATGTTGTTTTGCAGCTCCTCCAGCGTGGAGCTGATCCAAATCTTGCTGACAAAGAGGGACGGACAGCACTTATAGCTGCTGCTTACATGGGTCATAAGAAAGTTGTAGAAATACTGCTTGATCACAAAGCAGAAATCAATCACCCAGACAATGACGGCAGAACTGCTTTAGCTGTGACTGTTCTTTGTGTTTCCGCAAGTGAGAATCATGAAGCTGTTGTCGATCTTCTTCTAAACCGTGGCGCTGAGGTAGACCATCCTGATTTTGATGGCATTACACCGCTTTGTGTTTCGGCTCTGGAGGGTTACTACAACGTTGCAAAGTTGCTAATAAAAGCAGGGGCAGACACTGGCCATTGGGACAGAAATGGACGGACACCTCTGTTTGCGGCGGCAGCTAGTGGTCATTGTGACATTGTTGATTTGCTTCTGGCAACAGCAGAAGGTCACAAAGACGCAGTCGTGTCACTGCTAGGAGCAAACCTTGACATCAATGCACTTGATCCAGATGGAAGGTCTGCACTGATGTTAGCAGCACAGGAAGGTCATGTTGATGTAGTGTCGGCACTTATTGAGCATGGTTTACCTATTGAACAGGCATCCTCTGACGGACGCACAGCACTTCATTTTTCAGCCATTGAAGGACACGAGGCGTGTGTCCAACACCTGGTCAGTCTTGGAGCAGACGTCAATCACCAGGACAGTCTTGGACGGACACCTCTCTTTGCCGTGTCCATTGAAGAGAACAAGCAGATGGTTGAACTTTTGTTAGATCTCGGAGGTTTTGTTGACAGCAAGGACATGGAAGGAAGGACTCCGCTTCAGGCGGTAGCATGGAAGGGTGCTTACGAGTTAGTGGAGCTTTTCCTTGACAGAGGTGCAGAAATAAATCATGCCGATTGTGAAGGACGCACTGCTTTGATGTCAGCGGCATGGAAGGGTCATGTCTCTACAGTACAGTTGTTGATTCAGAAAGGTGCAAAAGTTGACAAGACATCACAGGAAGGTGCCACTGCACTTTGTATTGCATCTCAGGAAGGGCATGACGAAGTTGTACAGATTTTGCTTGAGCATGATGCTAACATGAATCATGCCGACAAGCTCGGAAGAACTCCAATGCAAGTTGCTTATGAAGCTGGTCATACAAGGGTAACAAAAGTCCTGGAAGCGTTCAGTGTGATGAGAATGAATGACGGAAACTTCACCAGTACCTTGAAGAGGAAGCTGTCGTCAGCGCAATCAGAGAGCGGCAGTACAGTGTCAAACAGTAGCTTTACAGAAAAGCCTCAAAGATCAGACAGCGTCTCCTCTTCAAACAGCTCTGAATCTCCTGCTGCCTCACGAAAGGAGCTTGGAGTACCAGGTTCGACGCATCAGCTTGGACCAAATGGAGAAATTTTAGAAGAAAGGCGTTACTCTGCCAGCTTTCGAGATTTGCACTCTGTTCAACCAATCAAGGAGCCGTGGAATTCAGCCTGCCCACCATACACGTCAGAATTGGATGTATTAAAACCACCCCCTTACACAGAAAAGCCTGTTAGGACATCCCTTGTTGAAGACGATGTGGTTGCAAGCAAGCCATCTCCAAGAGGTAAACACAAGCAGTTTTCCTTGCTTCACAAGATGAAGCAGAAAGGGAAAAGTGCATTTACTTCCAGTGGTTCTCATGGTCAAGAGAAACGTGGAAAGGTGACAGGCAAGCGTGGGTTTTTCTCTGGCATCAAGCAGCTAGGTGCAAGTTCATCTTATAGTGCTAGTTCATCGAAATCAAGAGAAGGAAAAACGGCAAACTCAAAAGGCTCAAATGAGTCTTTAGAAACAAAGATATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULJ7	Ankyrin repeat domain-containing protein 50 OS=Homo sapiens OX=9606 GN=ANKRD50 PE=1 SV=4
F1LTE0	Protein TANC2 OS=Rattus norvegicus OX=10116 GN=Tanc2 PE=1 SV=2
A2A690	Protein TANC2 OS=Mus musculus OX=10090 GN=Tanc2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009357 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13191 all species →	AAA_16	AAA ATPase domain	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR050745 all species →	Family	Multifunctional regulatory proteins	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041664 all species →	Domain	Orc1-like, AAA ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24189 all species →	MYOTROPHIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21440	ANKRD50; ankyrin repeat domain-containing protein 50	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.