Gene detail

Detailed information of evm.model.Ap5.271 in Astrangia poculata

Genomic Location: Ap5:2964680...2977351
NR annotation: XP_020619853.1, kinesin light chain-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.271

atggaggaatattctgatgtgtctgcctcttgcaagcacctgcccgcatcaataaaacaaggcacacccacatatgacgaattggaggacttgggtgaaaaaattgaaggaaagtgggaaaagcttgggcgtcggctgcacatcgatgatgcaaagcttcaagaaatacgtgaagctcgtgaccaattgtctgaaaagggatatcacatgttaaggcactggaaacaagaaagaggttctgctgcgacctatcaggctttgtgtgttgcattacaacataaacgtgtacagcgccaagacttggcagagcagttttgttactttcatggtacatgtctcagtggagcttcaagcaaaaaacaagaagaaccaagtagagttagaagtcgtctgaaacggaaaaggttgaaaccaaatcctaaacgagggaatttgtcttttaagattaggtgtgctagtgctattagcagaaactcgcatatgcaagatcctcaacaagcaagaaaaaaggtggactgctatatggaagaaaaagttgatgagggacagagaactttcaatatctattctcgcaaaggactaaaaaactattacgcgtacttgctaggacatcttgaactatggatagaaagctctgaaaaaggaagcataaaaataactgtgaaatgccgtaccctggagattcttgaacggctgtgggatgattattgctctggtcacctaaatgcagtagccgaggagtgcctcattacagagaatgttaaggacgatcttgatatggagactataacgcttacaacaactatattggaggaggactacttggcatgcaggttgtctttaatggaaatttcagttgaggcaagtgctgatgatggacagatggaatcgagagaacatgagttagaggaactcgaagagccaacagcatgcgctgatgttggacagcttgagctacgaagagacttggaatcgagagaacacgagttagaggaacttgaagagccgacaattgaagcaagtgctgatgatggacaggtcgagctacgaggagacttggaatcgagagaactcgagttagaggaactcaaagagccgacagatgaggcaagtgctgatgatggaaaggctgagcgacgaggagacctggaatcgagagaatacgagttagaggaactcgaagagccgacagaatgcgccataacaagaagagtcgatataatgcatgtgttgcaaatgtgtgacgatataaaaacatgctggcacgatttaggcattaagctcaagctcccacaagaaattctttacaacataaacgccgattacagatctactagtcgagagaaggccatggaaatgctctataagtggatggacagagaaggaagttttgctacggtcggcagtcttgtatacgctctcgaggacatagggagaaaaagagttgcacaaaaactgcttgaggaggaactaccaaaacgtggagtcaagcatgtcaatgttgggagtactgacaccggtttgggtactgtaaagcacgacagagaagacctgcagcaagccaaggagcatcatcaacgtgctctagacattcagttgaaaaagcttggacccgaacatgttgatatcgcaagtatgtacttgaaattaggtaaggtacactatgacttaggtgacctgcagcaggccagggagaattacaaacgtgctctagacataaggttgagaaagcttggacccgaccatgttgacgttgctcgtacgtataataacttagctattgtgcagtatgccttgggtgacctgcggcaggccagggagaattgcaaacgtgctctagacataaggctgagaacgcttggacccgaccatgttgatgtcgccactatgtacaataacttaggagctgtgcagcgtgccttgggtcacctgcagcaagccaaggagtttcatgaacgcgctttagacataaggctgaagaagcttgcacccggccatgtccttgtcgctactacgcacaaaaacttagctactgtgcagcgtgacttgggtgacctgcagcaggccaaggagaattacaaacgtgctttagacataaggttgagaaagcttggacctgaccatcctgatgttgcacgtactaatgataacttagctgctgtgcaacgtgacttgggtgacctgtag

Transcript

evm.model.Ap5.271

ATGGAGGAATATTCTGATGTGTCTGCCTCTTGCAAGCACCTGCCCGCATCAATAAAACAAGGCACACCCACATATGACGAATTGGAGGACTTGGGTGAAAAAATTGAAGGAAAGTGGGAAAAGCTTGGGCGTCGGCTGCACATCGATGATGCAAAGCTTCAAGAAATACGTGAAGCTCGTGACCAATTGTCTGAAAAGGGATATCACATGTTAAGGCACTGGAAACAAGAAAGAGGTTCTGCTGCGACCTATCAGGCTTTGTGTGTTGCATTACAACATAAACGTGTACAGCGCCAAGACTTGGCAGAGCAGTTTTGTTACTTTCATGGTACATGTCTCAGTGGAGCTTCAAGCAAAAAACAAGAAGAACCAAGTAGAGTTAGAAGTCGTCTGAAACGGAAAAGGTTGAAACCAAATCCTAAACGAGGGAATTTGTCTTTTAAGATTAGGTGTGCTAGTGCTATTAGCAGAAACTCGCATATGCAAGATCCTCAACAAGCAAGAAAAAAGGTGGACTGCTATATGGAAGAAAAAGTTGATGAGGGACAGAGAACTTTCAATATCTATTCTCGCAAAGGACTAAAAAACTATTACGCGTACTTGCTAGGACATCTTGAACTATGGATAGAAAGCTCTGAAAAAGGAAGCATAAAAATAACTGTGAAATGCCGTACCCTGGAGATTCTTGAACGGCTGTGGGATGATTATTGCTCTGGTCACCTAAATGCAGTAGCCGAGGAGTGCCTCATTACAGAGAATGTTAAGGACGATCTTGATATGGAGACTATAACGCTTACAACAACTATATTGGAGGAGGACTACTTGGCATGCAGGTTGTCTTTAATGGAAATTTCAGTTGAGGCAAGTGCTGATGATGGACAGATGGAATCGAGAGAACATGAGTTAGAGGAACTCGAAGAGCCAACAGCATGCGCTGATGTTGGACAGCTTGAGCTACGAAGAGACTTGGAATCGAGAGAACACGAGTTAGAGGAACTTGAAGAGCCGACAATTGAAGCAAGTGCTGATGATGGACAGGTCGAGCTACGAGGAGACTTGGAATCGAGAGAACTCGAGTTAGAGGAACTCAAAGAGCCGACAGATGAGGCAAGTGCTGATGATGGAAAGGCTGAGCGACGAGGAGACCTGGAATCGAGAGAATACGAGTTAGAGGAACTCGAAGAGCCGACAGAATGCGCCATAACAAGAAGAGTCGATATAATGCATGTGTTGCAAATGTGTGACGATATAAAAACATGCTGGCACGATTTAGGCATTAAGCTCAAGCTCCCACAAGAAATTCTTTACAACATAAACGCCGATTACAGATCTACTAGTCGAGAGAAGGCCATGGAAATGCTCTATAAGTGGATGGACAGAGAAGGAAGTTTTGCTACGGTCGGCAGTCTTGTATACGCTCTCGAGGACATAGGGAGAAAAAGAGTTGCACAAAAACTGCTTGAGGAGGAACTACCAAAACGTGGAGTCAAGCATGTCAATGTTGGGAGTACTGACACCGGTTTGGGTACTGTAAAGCACGACAGAGAAGACCTGCAGCAAGCCAAGGAGCATCATCAACGTGCTCTAGACATTCAGTTGAAAAAGCTTGGACCCGAACATGTTGATATCGCAAGTATGTACTTGAAATTAGGTAAGGTACACTATGACTTAGGTGACCTGCAGCAGGCCAGGGAGAATTACAAACGTGCTCTAGACATAAGGTTGAGAAAGCTTGGACCCGACCATGTTGACGTTGCTCGTACGTATAATAACTTAGCTATTGTGCAGTATGCCTTGGGTGACCTGCGGCAGGCCAGGGAGAATTGCAAACGTGCTCTAGACATAAGGCTGAGAACGCTTGGACCCGACCATGTTGATGTCGCCACTATGTACAATAACTTAGGAGCTGTGCAGCGTGCCTTGGGTCACCTGCAGCAAGCCAAGGAGTTTCATGAACGCGCTTTAGACATAAGGCTGAAGAAGCTTGCACCCGGCCATGTCCTTGTCGCTACTACGCACAAAAACTTAGCTACTGTGCAGCGTGACTTGGGTGACCTGCAGCAGGCCAAGGAGAATTACAAACGTGCTTTAGACATAAGGTTGAGAAAGCTTGGACCTGACCATCCTGATGTTGCACGTACTAATGATAACTTAGCTGCTGTGCAACGTGACTTGGGTGACCTGTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000408 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051787 all species →	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.271.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.