Gene detail

Detailed information of evm.model.Ap5.2717 in Astrangia poculata

Genomic Location: Ap5:27559884...27566289
NR annotation: XP_020604146.1, uncharacterized protein LOC110043074 isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46850	RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX=83333 GN=rtcB PE=1 SV=3
P0DX92	RNA-splicing ligase RtcB1 OS=Escherichia coli (strain ATCC 25922 / DSM 1103 / LMG 8223 / NCIMB 12210 / NCTC 12241 / WDCM 00013 / Seattle 1946) OX=1322345 GN=rtcB1 PE=1 SV=1
Q6LXF9	tRNA-splicing ligase RtcB OS=Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL) OX=267377 GN=rtcB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009009 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01139 all species →	RtcB	tRNA-splicing ligase RtcB	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036025 all species →	Homologous_superfamily	tRNA-splicing ligase RtcB-like superfamily	Interproscan
IPR001233 all species →	Family	RNA-splicing ligase, RtcB	Interproscan
IPR052915 all species →	Family	RNA-splicing ligase RtcB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43749 all species →	RNA-SPLICING LIGASE RTCB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008452 all species →	Molecular Function	RNA ligase activity	Interproscan
GO:0003909 all species →	Molecular Function	DNA ligase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0042245 all species →	Biological Process	RNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase)	EC:6.5.1.8	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.