Genomic Location: Ap5:27639787...27655615
NR annotation: XP_020604145.1, rho GTPase-activating protein 26-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap5.2725 |
| Transcript |
| evm.model.Ap5.2725 |
| Protein |
| evm.model.Ap5.2725 |
| UniProt accession | Description |
|---|---|
| Q5ZMW5 | Rho GTPase-activating protein 26 OS=Gallus gallus OX=9031 GN=ARHGAP26 PE=1 SV=2 |
| Q9UNA1 | Rho GTPase-activating protein 26 OS=Homo sapiens OX=9606 GN=ARHGAP26 PE=1 SV=1 |
| Q5U4T3 | Rho GTPase-activating protein 26 OS=Xenopus laevis OX=8355 GN=arhgap26 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002545 (this species only) |
| Ubiquitin family | UBD|Other|SH3 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16746 all species → | BAR_3 | BAR domain of APPL family | Domain | Interproscan |
| PF14604 all species → | SH3_9 | Variant SH3 domain | Domain | Interproscan |
| PF00620 all species → | RhoGAP | RhoGAP domain | Domain | Interproscan |
| PF00169 all species → | PH | PH domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004148 all species → | Domain | BAR domain | Interproscan |
| IPR001452 all species → | Domain | SH3 domain | Interproscan |
| IPR027267 all species → | Homologous_superfamily | AH/BAR domain superfamily | Interproscan |
| IPR008936 all species → | Homologous_superfamily | Rho GTPase activation protein | Interproscan |
| IPR000198 all species → | Domain | Rho GTPase-activating protein domain | Interproscan |
| IPR036028 all species → | Homologous_superfamily | SH3-like domain superfamily | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR001849 all species → | Domain | Pleckstrin homology domain | Interproscan |
| IPR047225 all species → | Domain | GRAF, PH domain | Interproscan |
| IPR047234 all species → | Family | GRAF family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12552 all species → | OLIGOPHRENIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0005096 all species → | Molecular Function | GTPase activator activity | Interproscan |
evm.model.Ap5.2725.Transcript abundance of evm.model.Ap5.2725 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
