Gene detail

Detailed information of evm.model.Ap5.2815 in Astrangia poculata

Genomic Location: Ap5:28603174...28608940
NR annotation: XP_020604490.1, uncharacterized protein LOC110043378 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2815

atggacgaagaaacaagctcggttgttctgttgcccggggtgaaagtagaaccttttgaaaactcagaaaataaccccgacagtgaagggagttcccttggaagtccaacagacgaaaactcgcttccacgctttggtgaaagttcagaggaggacattcaaaggttgttggagcatcgctcttgtagtgaaaacacatggaggtcaactaaaaatgccgtgaaaattctccgcgactacatggaagagaaaagtatggacgttcaatttgagaacatggacaagccagagttgaatgatctgctacgtaaattttacgttgaagcacgtaaaaagaatggagattactacaaatcttctgcccttggaagtatacggtttggtattctgcggtacttacagtcccaacagaggaatgtggacatcaaaaacgaccccgaattcaccgaatcaaacaaagttttcaaagctcaggtagaaaagctgaaaaagcaagggaaaggcgaagtgaaccgttccgacatcgggccagacgatttgaagaagctttatctgagtgatgttctgtcgccattcagcgccgatggcctccaaagaaaagttttcttcgacttgctcatgtatttaccaggaaaacggaacagaagtaacgtgagagagcaaactcgagatacgtttcttgtcgggtatcatgcaagtactggcttgaaatacgtttatcctaaccctgcacactgtgaaaacgtttttactgatggaaaatgtcctcggatgaatgaaaaaccaggaaatccaagatgcccagtggcgtcatttctcaagtacctttcaaagctgaacccgatgaatctgtacctctggcagagacccaaagcttccttcaagcatcacgcttgcgaagatgatcccatttggtatgaaaatgccgcagttggtcacaattcactgggtgaaatgatgacgaatatgtccaagcttgcacggttatccaggatttacacaaacaactgcatcagaggtacttatgtgtcaattctcgacagccttgtggaggattaccctcttattactactctggtatctctacccactgccccaagatatcaacatatcctccccagagaaccgtacgatgaacgtcctaccatggtgtctgttactgggaagtatatatcaagttcagagcaaacgccttcaccaagatgctgtgaaacccctgtgagctcaccaccatttaacgcagtgcaaaacagagaacacgctcatctcacaaaggttatcatttccccaaaccattctcaaacacagtcttttaactcaagtcttctcagcagtagtagaatttcatcttctcaaggtaatacccatgatgtttgtgaaaagcaaatggatgcaagccctgcgtcaagtccaacagaacctgtgcctggtcttccataccattctggccacagaggactgcacactccctttgtagcttacagattgagtcagcttcaagcagcttcttctcatagtctgcgcaattcactacagccaacttttaaaactaccacaagtagtttcagtttctcccaaacctcactagctcgtgctggaagtaaccacacagggcttgcaaattcaagagttgtttattgtcaaacagcaccagctatggcctcctcctcatcgtcaccatcctcgtcatcgcacatgatgcatcgtacagctgacagtagcccaatgactggaagcccactcaccactcatgttctggacacagccagaggttcaccagccaggaacctccaaatacagctgtactttgaggaaatacgacccgacagtagaatgtggaaacacattgcatcaggagttactaatgctgacggtagagttcctaacttgctgactcaggaacagtttatacctggaaaatacatgatcagatttgagacagaggcatatttcaaggacactggagtttcttcatttttctatccttatgtggagattgtgtttctcatcagcaatccatctcaacactaccatgtaccacttttacttagtccgttctcctactcaacctatcgtggaagctga

Transcript

evm.model.Ap5.2815

ATGGACGAAGAAACAAGCTCGGTTGTTCTGTTGCCCGGGGTGAAAGTAGAACCTTTTGAAAACTCAGAAAATAACCCCGACAGTGAAGGGAGTTCCCTTGGAAGTCCAACAGACGAAAACTCGCTTCCACGCTTTGGTGAAAGTTCAGAGGAGGACATTCAAAGGTTGTTGGAGCATCGCTCTTGTAGTGAAAACACATGGAGGTCAACTAAAAATGCCGTGAAAATTCTCCGCGACTACATGGAAGAGAAAAGTATGGACGTTCAATTTGAGAACATGGACAAGCCAGAGTTGAATGATCTGCTACGTAAATTTTACGTTGAAGCACGTAAAAAGAATGGAGATTACTACAAATCTTCTGCCCTTGGAAGTATACGGTTTGGTATTCTGCGGTACTTACAGTCCCAACAGAGGAATGTGGACATCAAAAACGACCCCGAATTCACCGAATCAAACAAAGTTTTCAAAGCTCAGGTAGAAAAGCTGAAAAAGCAAGGGAAAGGCGAAGTGAACCGTTCCGACATCGGGCCAGACGATTTGAAGAAGCTTTATCTGAGTGATGTTCTGTCGCCATTCAGCGCCGATGGCCTCCAAAGAAAAGTTTTCTTCGACTTGCTCATGTATTTACCAGGAAAACGGAACAGAAGTAACGTGAGAGAGCAAACTCGAGATACGTTTCTTGTCGGGTATCATGCAAGTACTGGCTTGAAATACGTTTATCCTAACCCTGCACACTGTGAAAACGTTTTTACTGATGGAAAATGTCCTCGGATGAATGAAAAACCAGGAAATCCAAGATGCCCAGTGGCGTCATTTCTCAAGTACCTTTCAAAGCTGAACCCGATGAATCTGTACCTCTGGCAGAGACCCAAAGCTTCCTTCAAGCATCACGCTTGCGAAGATGATCCCATTTGGTATGAAAATGCCGCAGTTGGTCACAATTCACTGGGTGAAATGATGACGAATATGTCCAAGCTTGCACGGTTATCCAGGATTTACACAAACAACTGCATCAGAGGTACTTATGTGTCAATTCTCGACAGCCTTGTGGAGGATTACCCTCTTATTACTACTCTGGTATCTCTACCCACTGCCCCAAGATATCAACATATCCTCCCCAGAGAACCGTACGATGAACGTCCTACCATGGTGTCTGTTACTGGGAAGTATATATCAAGTTCAGAGCAAACGCCTTCACCAAGATGCTGTGAAACCCCTGTGAGCTCACCACCATTTAACGCAGTGCAAAACAGAGAACACGCTCATCTCACAAAGGTTATCATTTCCCCAAACCATTCTCAAACACAGTCTTTTAACTCAAGTCTTCTCAGCAGTAGTAGAATTTCATCTTCTCAAGGTAATACCCATGATGTTTGTGAAAAGCAAATGGATGCAAGCCCTGCGTCAAGTCCAACAGAACCTGTGCCTGGTCTTCCATACCATTCTGGCCACAGAGGACTGCACACTCCCTTTGTAGCTTACAGATTGAGTCAGCTTCAAGCAGCTTCTTCTCATAGTCTGCGCAATTCACTACAGCCAACTTTTAAAACTACCACAAGTAGTTTCAGTTTCTCCCAAACCTCACTAGCTCGTGCTGGAAGTAACCACACAGGGCTTGCAAATTCAAGAGTTGTTTATTGTCAAACAGCACCAGCTATGGCCTCCTCCTCATCGTCACCATCCTCGTCATCGCACATGATGCATCGTACAGCTGACAGTAGCCCAATGACTGGAAGCCCACTCACCACTCATGTTCTGGACACAGCCAGAGGTTCACCAGCCAGGAACCTCCAAATACAGCTGTACTTTGAGGAAATACGACCCGACAGTAGAATGTGGAAACACATTGCATCAGGAGTTACTAATGCTGACGGTAGAGTTCCTAACTTGCTGACTCAGGAACAGTTTATACCTGGAAAATACATGATCAGATTTGAGACAGAGGCATATTTCAAGGACACTGGAGTTTCTTCATTTTTCTATCCTTATGTGGAGATTGTGTTTCTCATCAGCAATCCATCTCAACACTACCATGTACCACTTTTACTTAGTCCGTTCTCCTACTCAACCTATCGTGGAAGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q06S87	5-hydroxyisourate hydrolase OS=Danio rerio OX=7955 GN=urah PE=1 SV=1
Q9CRB3	5-hydroxyisourate hydrolase OS=Mus musculus OX=10090 GN=Urah PE=1 SV=1
Q21882	Probable 5-hydroxyisourate hydrolase R09H10.3 OS=Caenorhabditis elegans OX=6239 GN=R09H10.3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008298 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00576 all species →	Transthyretin	HIUase/Transthyretin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023418 all species →	Binding_site	Transthyretin, thyroxine binding site	Interproscan
IPR000895 all species →	Family	Transthyretin/hydroxyisourate hydrolase	Interproscan
IPR052787 all species →	Family	Mitochondrial antiviral-signaling domain-containing protein	Interproscan
IPR014306 all species →	Family	Hydroxyisourate hydrolase	Interproscan
IPR023416 all species →	Domain	Transthyretin/hydroxyisourate hydrolase domain	Interproscan
IPR023419 all species →	Conserved_site	Transthyretin, conserved site	Interproscan
IPR036817 all species →	Homologous_superfamily	Transthyretin/hydroxyisourate hydrolase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21446 all species →	DUF3504 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006144 all species →	Biological Process	purine nucleobase metabolic process	Interproscan
GO:0033971 all species →	Molecular Function	hydroxyisourate hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.2815.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.