Gene detail

Detailed information of evm.model.Ap5.2879 in Astrangia poculata

Genomic Location: Ap5:29297378...29297911
NR annotation: CAH3113203.1, unnamed protein product, partial [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58691	DELTA-stichotoxin-Hcr4a OS=Radianthus crispa OX=3122430 PE=1 SV=2
P07845	DELTA-stichotoxin-She4b OS=Stichodactyla helianthus OX=6123 PE=1 SV=2
P81662	DELTA-stichotoxin-She4a OS=Stichodactyla helianthus OX=6123 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001245 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06369 all species →	Anemone_cytotox	Sea anemone cytotoxic protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009104 all species →	Family	Sea anemone actinoporin-like	Interproscan
IPR015926 all species →	Homologous_superfamily	Cytolysin/lectin	Interproscan
IPR050677 all species →	Family	Actinoporin Pore-Forming Toxin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR40388 all species →	BRYOPORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0015267 all species →	Molecular Function	channel activity	Interproscan
GO:0046930 all species →	Cellular Component	pore complex	Interproscan
GO:0046931 all species →	Biological Process	pore complex assembly	Interproscan
GO:0051715 all species →	Biological Process	cytolysis in another organism	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.2879.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap5.2879 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

27TPM > 0

4Conditions

21,113.3Max TPM

1,876.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism · cold control	14	8	1,092.37	4,374.29
whole organism · heat control	12	12	5,824.43	21,113.26
whole organism · cold challenge	12	3	131.47	631.40
whole organism · heat challenge	11	4	473.03	1,811.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	4,374.29
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	2,866.16
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	2,664.50
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	1,880.38
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	1,287.09
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	886.42
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	739.58
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	594.70
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	21,113.26
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	7,727.71
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	7,708.43
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	7,522.38
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	5,919.17
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	4,995.54
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	4,706.10
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	2,943.48
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	2,631.27
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	2,297.43
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	1,421.32
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	907.06
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	631.40
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	547.52
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	398.76
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	1,811.13
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	1,720.97
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	942.76
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	728.44
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.