Gene detail

Detailed information of evm.model.Ap5.2886 in Astrangia poculata

Genomic Location: Ap5:29356869...29371387
NR annotation: XP_020618645.1, FERM domain-containing protein 4A-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2886

atgactgatgctcgcaggccgcgaagatgtcagatcataatgctggacgaacgacgtctagatcttttagtacagccgcgtttgatggcttgtgatttactggatatggttgcctcgcaagttggcttacacgagaaggaatattttggcctctcttattccgatgacacgagtcaccaaaactggttacgacttgacagacgtgtgctagaacatgaccttccaagatatcaagaccctgttcttttaattttttgtgtcagattttttgtcccgaatattttaattttgaaagaaacaagtactgtggaacttttcttccttcaagcacggattcttatatttaagggtacaattcagtgtgatagtgaaactgtttttgagcttgctgcccttgctcttcatgcaacttgtggggactatacaagtgatgaagcagcaagagcagaacttcgaaaacttccagttcttcccacgagaacactcaaagaacgaccttcaataacttactgtgaagataaagtgttagagtactacaagaagtctgctgggcagacgagaggtgaatctattgtcaggtatctgtgtatttttcaaagcttgccaacatatggtgtacattactatgaagtcaaggacaaaagtaacatgccctggtggctaggactcagccctaaaggaattggtctttatgaccatggtgataaaattaaacccagaaagattttcatgtggagtcagatagagaatatttatttccgagaaagaaaattctccattgagattagagattcatacagggtgaacacaattacccgcaagccaggagcaggaagcatgatggttcacgcctggttttccagcacagctgtgttagcgaaaaccatgtggacaatggccatcagtcaacaccagttttatctggacaagaaacaagttgaggccaagataacactgcggagaaatcttcgagacatggcacgtgagttgtctcagtccacaggatcattgccttcgtccacatcagacagcatgagtacccagagtgagtcacgcagtatatccagtgtcagcatgaatggaggtgataacttgtcgtcgcttccgaaagccgcggaacgtgaaatgttgacagctttggcagcgagaaaggaggctcttctggataaactgaaagaaaaaatggatgaacttaaatcactgtgcatgcaggaagcagaattcaccggagaatatcccccggagacaccatacacccctgggagccccctgccaccgatcagacggagagtacgcaccgcatttgaattctctgagttcatcatcagtggggaaaaggatgaggatgaagaagtcaagaccatggcaagggaaattgaaatccagtcacagataacaactgctgatcagaaacttgcagaggatcgcagtgctagcaagaatattaggaaaactaggaagttaacttaccagaagtcactgagaaggctcaaagacatggaagagaaccttcggaaaaagaagcagtctcgatcgccattgacgtccaaccacgatgaaaaagatagcaagacggctgaaggtttttatcgttctcattcctcttccaacgggagcagctacactcaaacagagagacttagccctcatcgctatcgaacaagtgtcagcctgagcattgcttcaagaaacggaagtaccattagcgcagaaagtcttcaggacaaagacgcattcgaacgggggtattacagcgggcccccctctccggtgacatcaccgtatcggaaagctccccccagccccactgctaggtcttatcatggattctcagagacaagacgacagcatagcccacttgctaatggtccccgggcggggagattttcacccggaagggaaaaccaccgtgcagtgccggcgtttcagtattctgatagcgacactcgcagtgactcctctacaaagccgtcgtcggtgagttcgtacgcgaactcggaagacttcggagaaaaccccgagccttattggcaccatcggagaataggaaactcgtgtgaaagtctggacgagaatcacatccgaggaccgagtcctcggttgtttgctaatcattctgcaggacagagttcggagagtcttaacagcgatcacgaagggaattattctccgtttagtcctgtacgaaatcaacggtcaaattcatttgacgctcgaccttcaaacttaaaacttccaaacgtgaagtatttaaacaccagtgacttggcaataatgagtacctcgggcacagcaggtagttattctgttaatcacaattcaagattatctcccaatctcgctggtaagggatacatctccacatctatgtcgaccattgataagcctaccttgttatcgaatacgaatttaagaacagttagatcccaggtcaacatgtcagcagtgccttacttgacaaatcctggatattatcggactaaccaactgtcggaatcatcgatttatgaagaggacttgcttgaatggagagctaatgacgattcggaggcaacgtatgtataa

Transcript

evm.model.Ap5.2886

ATGACTGATGCTCGCAGGCCGCGAAGATGTCAGATCATAATGCTGGACGAACGACGTCTAGATCTTTTAGTACAGCCGCGTTTGATGGCTTGTGATTTACTGGATATGGTTGCCTCGCAAGTTGGCTTACACGAGAAGGAATATTTTGGCCTCTCTTATTCCGATGACACGAGTCACCAAAACTGGTTACGACTTGACAGACGTGTGCTAGAACATGACCTTCCAAGATATCAAGACCCTGTTCTTTTAATTTTTTGTGTCAGATTTTTTGTCCCGAATATTTTAATTTTGAAAGAAACAAGTACTGTGGAACTTTTCTTCCTTCAAGCACGGATTCTTATATTTAAGGGTACAATTCAGTGTGATAGTGAAACTGTTTTTGAGCTTGCTGCCCTTGCTCTTCATGCAACTTGTGGGGACTATACAAGTGATGAAGCAGCAAGAGCAGAACTTCGAAAACTTCCAGTTCTTCCCACGAGAACACTCAAAGAACGACCTTCAATAACTTACTGTGAAGATAAAGTGTTAGAGTACTACAAGAAGTCTGCTGGGCAGACGAGAGGTGAATCTATTGTCAGGTATCTGTGTATTTTTCAAAGCTTGCCAACATATGGTGTACATTACTATGAAGTCAAGGACAAAAGTAACATGCCCTGGTGGCTAGGACTCAGCCCTAAAGGAATTGGTCTTTATGACCATGGTGATAAAATTAAACCCAGAAAGATTTTCATGTGGAGTCAGATAGAGAATATTTATTTCCGAGAAAGAAAATTCTCCATTGAGATTAGAGATTCATACAGGGTGAACACAATTACCCGCAAGCCAGGAGCAGGAAGCATGATGGTTCACGCCTGGTTTTCCAGCACAGCTGTGTTAGCGAAAACCATGTGGACAATGGCCATCAGTCAACACCAGTTTTATCTGGACAAGAAACAAGTTGAGGCCAAGATAACACTGCGGAGAAATCTTCGAGACATGGCACGTGAGTTGTCTCAGTCCACAGGATCATTGCCTTCGTCCACATCAGACAGCATGAGTACCCAGAGTGAGTCACGCAGTATATCCAGTGTCAGCATGAATGGAGGTGATAACTTGTCGTCGCTTCCGAAAGCCGCGGAACGTGAAATGTTGACAGCTTTGGCAGCGAGAAAGGAGGCTCTTCTGGATAAACTGAAAGAAAAAATGGATGAACTTAAATCACTGTGCATGCAGGAAGCAGAATTCACCGGAGAATATCCCCCGGAGACACCATACACCCCTGGGAGCCCCCTGCCACCGATCAGACGGAGAGTACGCACCGCATTTGAATTCTCTGAGTTCATCATCAGTGGGGAAAAGGATGAGGATGAAGAAGTCAAGACCATGGCAAGGGAAATTGAAATCCAGTCACAGATAACAACTGCTGATCAGAAACTTGCAGAGGATCGCAGTGCTAGCAAGAATATTAGGAAAACTAGGAAGTTAACTTACCAGAAGTCACTGAGAAGGCTCAAAGACATGGAAGAGAACCTTCGGAAAAAGAAGCAGTCTCGATCGCCATTGACGTCCAACCACGATGAAAAAGATAGCAAGACGGCTGAAGGTTTTTATCGTTCTCATTCCTCTTCCAACGGGAGCAGCTACACTCAAACAGAGAGACTTAGCCCTCATCGCTATCGAACAAGTGTCAGCCTGAGCATTGCTTCAAGAAACGGAAGTACCATTAGCGCAGAAAGTCTTCAGGACAAAGACGCATTCGAACGGGGGTATTACAGCGGGCCCCCCTCTCCGGTGACATCACCGTATCGGAAAGCTCCCCCCAGCCCCACTGCTAGGTCTTATCATGGATTCTCAGAGACAAGACGACAGCATAGCCCACTTGCTAATGGTCCCCGGGCGGGGAGATTTTCACCCGGAAGGGAAAACCACCGTGCAGTGCCGGCGTTTCAGTATTCTGATAGCGACACTCGCAGTGACTCCTCTACAAAGCCGTCGTCGGTGAGTTCGTACGCGAACTCGGAAGACTTCGGAGAAAACCCCGAGCCTTATTGGCACCATCGGAGAATAGGAAACTCGTGTGAAAGTCTGGACGAGAATCACATCCGAGGACCGAGTCCTCGGTTGTTTGCTAATCATTCTGCAGGACAGAGTTCGGAGAGTCTTAACAGCGATCACGAAGGGAATTATTCTCCGTTTAGTCCTGTACGAAATCAACGGTCAAATTCATTTGACGCTCGACCTTCAAACTTAAAACTTCCAAACGTGAAGTATTTAAACACCAGTGACTTGGCAATAATGAGTACCTCGGGCACAGCAGGTAGTTATTCTGTTAATCACAATTCAAGATTATCTCCCAATCTCGCTGGTAAGGGATACATCTCCACATCTATGTCGACCATTGATAAGCCTACCTTGTTATCGAATACGAATTTAAGAACAGTTAGATCCCAGGTCAACATGTCAGCAGTGCCTTACTTGACAAATCCTGGATATTATCGGACTAACCAACTGTCGGAATCATCGATTTATGAAGAGGACTTGCTTGAATGGAGAGCTAATGACGATTCGGAGGCAACGTATGTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q920B0	FERM domain-containing protein 4B OS=Mus musculus OX=10090 GN=Frmd4b PE=1 SV=2
Q8BIE6	FERM domain-containing protein 4A OS=Mus musculus OX=10090 GN=Frmd4a PE=1 SV=2
Q9P2Q2	FERM domain-containing protein 4A OS=Homo sapiens OX=9606 GN=FRMD4A PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003458 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan
PF11819 all species →	CUPID	Cytohesin Ubiquitin Protein Inducing Domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF09380 all species →	FERM_C	FERM C-terminal PH-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR041785 all species →	Domain	FRMD4A/B, FERM domain C-lobe	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR047176 all species →	Family	FERM domain-containing protein 4A/B	Interproscan
IPR021774 all species →	Domain	Cytohesin Ubiquitin Protein Inducing Domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR019747 all species →	Conserved_site	FERM conserved site	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46079 all species →	FERM DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0090162 all species →	Biological Process	establishment of epithelial cell polarity	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23970	FRMD4; FERM domain-containing protein 4	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.