Gene detail

Detailed information of evm.model.Ap5.2887 in Astrangia poculata

Genomic Location: Ap5:29372229...29386079
NR annotation: XP_020618640.1, kinesin-like protein unc-104 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2887

atgaagacttctggagaaacaaacgtgaaggttgcagctcgttgcaggcccttcaatgagagcgaaaagggaagggctgctacaagagtggttaaaatgagcgctgaaaaaacagtcatacacaacccacaccctggaactaacacaaaggagcaaatattttatgaccttggttcacccttgttaaagaaagctctggatggttataatgcaaccctttgtgcttatggacagactggtacaggtaaaacgtacaccatgatgggtactgaagaggaacctggtattatacctctgctgaatcaagaactgttcaagcatattgatgaagctcctccaagcaaacagttctttgtcacagtttctttttatgagatttatcaagaaatgattcacgaccttctgaacccaactggacaggatctgagggtcagacagcatccacagctgggaatgtcagactgtgttttcaccattcatgtcgagcagaagagtaatggtggctctagtgggaaaggaattaggtccaagataaccttgattgatatggcaggatctgagcgtttggagggggttgacctcaacattcaaagtgaaggtgcttttataaacaaagggataagtgctctaaatgctgtggtcagtgctttggcagatcccaagaaaaaagaaggccatatcccatacagagaatcaaaacttacaagaatattacaggattcacttggtggcagcgcatgtacagctatgatcatgactgtctcaccagcagattctgattatgaggagacgttagcgtcgatgcagtgcgggaacaaggcaaaactgattgaaaatgctgccaagagaaacgagatagagaacaccaaaataatccaggatttgagagatgagatcgcacgcttacgagaaaagctagcgacctctggcagaactggaggagcaagcaaagatgatgtccttcagatggaagagctgataaaggatttgcagacagctaaacggcaaacatgggaggaacgagaaagattgtcagagcattacgatgaagaacgaaggataacgctagccaacaagggtattttggactgggtcatggacagcacaaaaagagacaacaaagaagtacaagaaaaaatgatggcgctgcagaaggagaaagatcagttgacggccgaattcaaagagaagcggaaactagtggatgaactcaaagatgaactgcagttaaagattgctgattactccaagatggctgaatctggcaagagcagcgaggaagaaaacaagtccagagtagcagctatacacgatttgaaggagaaactcaagggcgagaatgatgagctgaaaaagattaaacacaagttaaaagatgtacaggaaaaacagaaagccgagaaagaggaagccaagtcgcaaaccacctttttgaaaggaaatgcagagctacgatacaggatagagagcgaacgacgtgataaacatgagaaagagaatgctcttacactggcagacgaggtggatcgcgtcaaaatggaggtggagcaggaaaaggctgagctgcagttgaaagcagcagagggtgcacagtacagcactgaacaggccataaaactggaagtggagctggttgagttgaaagctgagcgaactgttatgtcactgcggattcaatcgataacggaggagaaaaagcgcttaaaagcagacttggaagaggcttacaaaagacataaggaagaactggaaattcaacagctacaacacttccagacatttcgaaattaccgagaagtgtttgaggagcagaaatcagccattgaacagcgctaccgcactctgctggaagagtcgatacaagatgctgtgttcctatccacaagaaatcaagagcttatgcatgagaaccaagtgattaaacaagaaatggcagagttaaaagaccaactgtcacttggaggagcgaacgtaaatcaagcatag

Transcript

evm.model.Ap5.2887

ATGAAGACTTCTGGAGAAACAAACGTGAAGGTTGCAGCTCGTTGCAGGCCCTTCAATGAGAGCGAAAAGGGAAGGGCTGCTACAAGAGTGGTTAAAATGAGCGCTGAAAAAACAGTCATACACAACCCACACCCTGGAACTAACACAAAGGAGCAAATATTTTATGACCTTGGTTCACCCTTGTTAAAGAAAGCTCTGGATGGTTATAATGCAACCCTTTGTGCTTATGGACAGACTGGTACAGGTAAAACGTACACCATGATGGGTACTGAAGAGGAACCTGGTATTATACCTCTGCTGAATCAAGAACTGTTCAAGCATATTGATGAAGCTCCTCCAAGCAAACAGTTCTTTGTCACAGTTTCTTTTTATGAGATTTATCAAGAAATGATTCACGACCTTCTGAACCCAACTGGACAGGATCTGAGGGTCAGACAGCATCCACAGCTGGGAATGTCAGACTGTGTTTTCACCATTCATGTCGAGCAGAAGAGTAATGGTGGCTCTAGTGGGAAAGGAATTAGGTCCAAGATAACCTTGATTGATATGGCAGGATCTGAGCGTTTGGAGGGGGTTGACCTCAACATTCAAAGTGAAGGTGCTTTTATAAACAAAGGGATAAGTGCTCTAAATGCTGTGGTCAGTGCTTTGGCAGATCCCAAGAAAAAAGAAGGCCATATCCCATACAGAGAATCAAAACTTACAAGAATATTACAGGATTCACTTGGTGGCAGCGCATGTACAGCTATGATCATGACTGTCTCACCAGCAGATTCTGATTATGAGGAGACGTTAGCGTCGATGCAGTGCGGGAACAAGGCAAAACTGATTGAAAATGCTGCCAAGAGAAACGAGATAGAGAACACCAAAATAATCCAGGATTTGAGAGATGAGATCGCACGCTTACGAGAAAAGCTAGCGACCTCTGGCAGAACTGGAGGAGCAAGCAAAGATGATGTCCTTCAGATGGAAGAGCTGATAAAGGATTTGCAGACAGCTAAACGGCAAACATGGGAGGAACGAGAAAGATTGTCAGAGCATTACGATGAAGAACGAAGGATAACGCTAGCCAACAAGGGTATTTTGGACTGGGTCATGGACAGCACAAAAAGAGACAACAAAGAAGTACAAGAAAAAATGATGGCGCTGCAGAAGGAGAAAGATCAGTTGACGGCCGAATTCAAAGAGAAGCGGAAACTAGTGGATGAACTCAAAGATGAACTGCAGTTAAAGATTGCTGATTACTCCAAGATGGCTGAATCTGGCAAGAGCAGCGAGGAAGAAAACAAGTCCAGAGTAGCAGCTATACACGATTTGAAGGAGAAACTCAAGGGCGAGAATGATGAGCTGAAAAAGATTAAACACAAGTTAAAAGATGTACAGGAAAAACAGAAAGCCGAGAAAGAGGAAGCCAAGTCGCAAACCACCTTTTTGAAAGGAAATGCAGAGCTACGATACAGGATAGAGAGCGAACGACGTGATAAACATGAGAAAGAGAATGCTCTTACACTGGCAGACGAGGTGGATCGCGTCAAAATGGAGGTGGAGCAGGAAAAGGCTGAGCTGCAGTTGAAAGCAGCAGAGGGTGCACAGTACAGCACTGAACAGGCCATAAAACTGGAAGTGGAGCTGGTTGAGTTGAAAGCTGAGCGAACTGTTATGTCACTGCGGATTCAATCGATAACGGAGGAGAAAAAGCGCTTAAAAGCAGACTTGGAAGAGGCTTACAAAAGACATAAGGAAGAACTGGAAATTCAACAGCTACAACACTTCCAGACATTTCGAAATTACCGAGAAGTGTTTGAGGAGCAGAAATCAGCCATTGAACAGCGCTACCGCACTCTGCTGGAAGAGTCGATACAAGATGCTGTGTTCCTATCCACAAGAAATCAAGAGCTTATGCATGAGAACCAAGTGATTAAACAAGAAATGGCAGAGTTAAAAGACCAACTGTCACTTGGAGGAGCGAACGTAAATCAAGCATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EQW7	Kinesin-like protein KIF13A OS=Mus musculus OX=10090 GN=Kif13a PE=1 SV=1
Q28WQ1	Kinesin-like protein unc-104 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=unc-104 PE=3 SV=1
Q17BU3	Kinesin-like protein unc-104 OS=Aedes aegypti OX=7159 GN=unc-104 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006331 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47969 all species →	CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005875 all species →	Cellular Component	microtubule associated complex	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0051231 all species →	Biological Process	spindle elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.2887.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.