Gene detail

Detailed information of evm.model.Ap5.2942_evm.model.Ap5.2944 in Astrangia poculata

Genomic Location: Ap5:29981328...30001148
NR annotation: XP_020608271.1, sorting nexin-25-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2942_evm.model.Ap5.2944

atgatgcaagcttactacattggaggctgtgttctcgtgttagctgtgctatggcaggttggttttcttcacgcgctctgctcgacactgtggaactgttttgtggtactgatgggaattttctccggtgttatgctgtaccttctctcgggaaaacagcggaatccaccgacaccgaaaccatcgaaaaaagttgacaccgtgacgcgatttcttgccaagttagctcgaagccaaactcacaaaccgtacaagcacaaggctgtggtgtcacggcctgtcgacaaaaccatccaagaagtgtttgatttcttcatccgtgatttttgcttgtcttggtttcatgatatggggaaggacgaagccgctttcgttgatctgttaactgaagaactttgggtagttacagccaatgttgtggaaagactgaaatgtatcgatactgtgaaattcctgtcaaatgatgttgtggaaattctcagtagacactttcaaaggctgcgacttgcagatacacggaacttctctgataatgccctccctttcgttcttcacccgtgcctaacaagcagagctgaagaactagaatatctacggaaagcctctgaagtcttgctctactgccttcttcccccgaagaattctcgctgttccaccatgcgctaccttctgcgtgagattttagctttctctgtgtttcaacctctagctgacatgctgtgtgatccagattacataaaccaaacccttctcgtgcacttggaagcaaaagaagctgttacagctcaacacaagcaaggttatgcctatgcagaaacatatgaagacttcattaaaatgatcaacacatcaaactcagtagaagctcttaagcaaatcaggtatcacattattgcagagatcatgcaggcaaccacaattaataacttaaaaggaattgaccagtttggacaagatgacaaacaaggaaaagcactgaagaaggatgcccagctaagggctcgaaatctcaagcgttacatcaatcagtgtactgtggcaaaatcacagtgtgagcggcgaatcaaaatgttaggggggccagattatactaaccatggaggcacagattttaaacagacaggacgagagaaagtaaagctgattcagaaactttcacaacctaaagccaaagtgttgagttttactgaggtcatggacaacagcttggcaaggagttttttcatgctgtttcttcagaataaaactggtagcaaaaatacgctgagtttctggatggcagttgagaaccttaaactggttaaacacaaggaactacacaagagtgcacaggaaatataccaagtgtatgttgtgccgtcttcagacaaatctgtgatgctggataccactcttatcaggggaatggaacagtatctggagggaacgcgtggactccaagcattctttgaggcacaaaagagggtttataaaaatctggaggagaggttttatcgcaagtttgtgctgagtgaggagtacttcatgtttgtttgtcagtcggaggcagaaatggatgacttgcgtgctcaaaagagagatgaagatgatctggaattgaattggaatgataatgttgataccactgatgaagatgttgaggatgatgaaagtgatggacctccaaagctcgctcgcaagccaagcactgtggaagagcgaagtgatgcaattgtgaacaagctggaagttctagatcaaagacttgcttcaaagacacagcaactggaacttatgaagagaagttttggagctgaggttgaggaaatggaacatctggagaatgaaattgagaggttaaaaattgagagaatgcaactagaattccatgttgaaagaacagatcaatggtgcaaaaatttgggaaagtggaaaatagagattcctagtgtagaatggaatccagacggtgaaatgtcagttcctgtttatgctatcgtggttcacagtgcagcggaggaacatcaactcctacccccaggagggaagccaagagaaggagatgggagtttaaattcacaaggatgggttgtcaccaggagattcagagattttgagactcttcatgtcaagttgaaagagtgttgtacttggctaactcgtgaactgccagtaccttccaaaaaatggtacaaatccatagatgatgagtttttggaacgatcaaggaaagctctggaagaatatctgcagacattgttagcagatgaaaagctgtgtttgagtgaagaactgtattcctttctcagcccaagtcctgaacatcttaagaagcaaagtgaaccaaccaaaaaagggttttcccttttgtcagtgttgaaaagcttaccttttgacatcattcctgctgaagaagctgatgaggaaactggtcttgatcaagatgacagttcaatgcgcaaggattccatagctgagccattttatggactgattggtgaaatatttgagctaaaaggagttttcaaatggctgaggagaactttaatagcatttgtacaagtaacatttggtggcaccattaacaaagaaattcaccgcatggtagagtggcttgtatctgaatcaatggtgatgtactatattcacttgttccgtgactcaatgtggccaggaggagaactggctaaacctgctggaacacggactgagacagaaaaaattgaaactagcagaagagctagacagaaacttctaaagaatatcccagaagttcttcagaatctggtgggaaagaaaaacagtaaacttggaactctgaagttgtttgaagcatttcaggatataagagttaccaagcatctcttctatgttcttttcgaacttattttatcgactctttgccctgaagtcatatctgatgatgttaaactgaaagcaaagattatgaagaatacacaagaagctttgccgtaa

Transcript

evm.model.Ap5.2942_evm.model.Ap5.2944

ATGATGCAAGCTTACTACATTGGAGGCTGTGTTCTCGTGTTAGCTGTGCTATGGCAGGTTGGTTTTCTTCACGCGCTCTGCTCGACACTGTGGAACTGTTTTGTGGTACTGATGGGAATTTTCTCCGGTGTTATGCTGTACCTTCTCTCGGGAAAACAGCGGAATCCACCGACACCGAAACCATCGAAAAAAGTTGACACCGTGACGCGATTTCTTGCCAAGTTAGCTCGAAGCCAAACTCACAAACCGTACAAGCACAAGGCTGTGGTGTCACGGCCTGTCGACAAAACCATCCAAGAAGTGTTTGATTTCTTCATCCGTGATTTTTGCTTGTCTTGGTTTCATGATATGGGGAAGGACGAAGCCGCTTTCGTTGATCTGTTAACTGAAGAACTTTGGGTAGTTACAGCCAATGTTGTGGAAAGACTGAAATGTATCGATACTGTGAAATTCCTGTCAAATGATGTTGTGGAAATTCTCAGTAGACACTTTCAAAGGCTGCGACTTGCAGATACACGGAACTTCTCTGATAATGCCCTCCCTTTCGTTCTTCACCCGTGCCTAACAAGCAGAGCTGAAGAACTAGAATATCTACGGAAAGCCTCTGAAGTCTTGCTCTACTGCCTTCTTCCCCCGAAGAATTCTCGCTGTTCCACCATGCGCTACCTTCTGCGTGAGATTTTAGCTTTCTCTGTGTTTCAACCTCTAGCTGACATGCTGTGTGATCCAGATTACATAAACCAAACCCTTCTCGTGCACTTGGAAGCAAAAGAAGCTGTTACAGCTCAACACAAGCAAGGTTATGCCTATGCAGAAACATATGAAGACTTCATTAAAATGATCAACACATCAAACTCAGTAGAAGCTCTTAAGCAAATCAGGTATCACATTATTGCAGAGATCATGCAGGCAACCACAATTAATAACTTAAAAGGAATTGACCAGTTTGGACAAGATGACAAACAAGGAAAAGCACTGAAGAAGGATGCCCAGCTAAGGGCTCGAAATCTCAAGCGTTACATCAATCAGTGTACTGTGGCAAAATCACAGTGTGAGCGGCGAATCAAAATGTTAGGGGGGCCAGATTATACTAACCATGGAGGCACAGATTTTAAACAGACAGGACGAGAGAAAGTAAAGCTGATTCAGAAACTTTCACAACCTAAAGCCAAAGTGTTGAGTTTTACTGAGGTCATGGACAACAGCTTGGCAAGGAGTTTTTTCATGCTGTTTCTTCAGAATAAAACTGGTAGCAAAAATACGCTGAGTTTCTGGATGGCAGTTGAGAACCTTAAACTGGTTAAACACAAGGAACTACACAAGAGTGCACAGGAAATATACCAAGTGTATGTTGTGCCGTCTTCAGACAAATCTGTGATGCTGGATACCACTCTTATCAGGGGAATGGAACAGTATCTGGAGGGAACGCGTGGACTCCAAGCATTCTTTGAGGCACAAAAGAGGGTTTATAAAAATCTGGAGGAGAGGTTTTATCGCAAGTTTGTGCTGAGTGAGGAGTACTTCATGTTTGTTTGTCAGTCGGAGGCAGAAATGGATGACTTGCGTGCTCAAAAGAGAGATGAAGATGATCTGGAATTGAATTGGAATGATAATGTTGATACCACTGATGAAGATGTTGAGGATGATGAAAGTGATGGACCTCCAAAGCTCGCTCGCAAGCCAAGCACTGTGGAAGAGCGAAGTGATGCAATTGTGAACAAGCTGGAAGTTCTAGATCAAAGACTTGCTTCAAAGACACAGCAACTGGAACTTATGAAGAGAAGTTTTGGAGCTGAGGTTGAGGAAATGGAACATCTGGAGAATGAAATTGAGAGGTTAAAAATTGAGAGAATGCAACTAGAATTCCATGTTGAAAGAACAGATCAATGGTGCAAAAATTTGGGAAAGTGGAAAATAGAGATTCCTAGTGTAGAATGGAATCCAGACGGTGAAATGTCAGTTCCTGTTTATGCTATCGTGGTTCACAGTGCAGCGGAGGAACATCAACTCCTACCCCCAGGAGGGAAGCCAAGAGAAGGAGATGGGAGTTTAAATTCACAAGGATGGGTTGTCACCAGGAGATTCAGAGATTTTGAGACTCTTCATGTCAAGTTGAAAGAGTGTTGTACTTGGCTAACTCGTGAACTGCCAGTACCTTCCAAAAAATGGTACAAATCCATAGATGATGAGTTTTTGGAACGATCAAGGAAAGCTCTGGAAGAATATCTGCAGACATTGTTAGCAGATGAAAAGCTGTGTTTGAGTGAAGAACTGTATTCCTTTCTCAGCCCAAGTCCTGAACATCTTAAGAAGCAAAGTGAACCAACCAAAAAAGGGTTTTCCCTTTTGTCAGTGTTGAAAAGCTTACCTTTTGACATCATTCCTGCTGAAGAAGCTGATGAGGAAACTGGTCTTGATCAAGATGACAGTTCAATGCGCAAGGATTCCATAGCTGAGCCATTTTATGGACTGATTGGTGAAATATTTGAGCTAAAAGGAGTTTTCAAATGGCTGAGGAGAACTTTAATAGCATTTGTACAAGTAACATTTGGTGGCACCATTAACAAAGAAATTCACCGCATGGTAGAGTGGCTTGTATCTGAATCAATGGTGATGTACTATATTCACTTGTTCCGTGACTCAATGTGGCCAGGAGGAGAACTGGCTAAACCTGCTGGAACACGGACTGAGACAGAAAAAATTGAAACTAGCAGAAGAGCTAGACAGAAACTTCTAAAGAATATCCCAGAAGTTCTTCAGAATCTGGTGGGAAAGAAAAACAGTAAACTTGGAACTCTGAAGTTGTTTGAAGCATTTCAGGATATAAGAGTTACCAAGCATCTCTTCTATGTTCTTTTCGAACTTATTTTATCGACTCTTTGCCCTGAAGTCATATCTGATGATGTTAAACTGAAAGCAAAGATTATGAAGAATACACAAGAAGCTTTGCCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H3E2	Sorting nexin-25 OS=Homo sapiens OX=9606 GN=SNX25 PE=1 SV=2
Q3ZT31	Sorting nexin-25 OS=Mus musculus OX=10090 GN=Snx25 PE=1 SV=3
Q8BHY8	Sorting nexin-14 OS=Mus musculus OX=10090 GN=Snx14 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003630 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08628 all species →	Nexin_C	Sorting nexin C terminal	Family	Interproscan
PF02194 all species →	PXA	PXA domain	Family	Interproscan
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR013937 all species →	Domain	Sorting nexin, C-terminal	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR003114 all species →	Domain	Phox-associated domain	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22775 all species →	SORTING NEXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17887	SNX25, MDM1; sorting nexin-25	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.