Gene detail

Detailed information of evm.model.Ap5.2950.1.5f1690d1 in Astrangia poculata

Genomic Location: Ap5:30060406...30072322
NR annotation: CAH3148380.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2950.1.5f1690d1

atgctcaagtccaaggtattcgtaaagaagacccgcaagggaggagtaatgaaagtagtacgtgaacattacttgcgagatgatgtgtggtgcggagcaagtcactgtacaaactgtgctcaaactgacgataatttacttgattccacaccgctgagctcttccaaactatgcagttttccgcactatttattacttgatacaaacgtcgtgttacatcaggtagatgtcctggaagatccagtattcaaaaatgtgatacttctacaaactgttttacaagaggtccaacatctcaatagttcagtgtataaaagaatcagagacatagtatcaagcaaacacaggaagttttttgttttctcaaatgagcatcacagagaaacgtacatagaaagaaaaaaagaagaatcatctaatgacagaaatgatcgagcaataagagttgcagcaagctggtatgatgagcacttgaaggaatgtgaaggaggaaatgatgaagatctgaggataaggattgttcttctcaccaatgacagagaaaaccgagagaaagctaaaaaggagggaatcataagctatacagctcaggagtatgttgaaagtcttgaaggatgtgaaggtttagccgaccggctggctcacacctcccagcagggacaagatgaggttgatgacaagaaaaccagaaagttggtttatcctgagcatcttcccctgacaaagatacaggctggactaaaaagtggcaagtacctacagggtgcatttcacagaagtagggaaaattacacagaagctaatgtatttgtccatgatgacgacaagcagatttttatccaaggtctggtaaatctcaaccgtgcggtccatgaagacattgttgcggtggagatcttaccaaagaagcaatggacctgtccatcatcagttgtaactacaacattaccaactgacaatgatgatgacgatgatggcagtgacaatgaaagtgaccttacgactgcatcacagaaacagggaacaaacaaagtgttgtctggaaaagttgttggtataatcaaaagaaactggcgtccatactgtggcatcctgtccaagtcagccaagccacagggtacaagacacttgtttgtggcagcagaaagaagaatacccaggatagtgattgaaacacgtcaggcagcctcacttgaagggcaaaggattgtggttagcattgattcatggcctcagcattcgaaatatccagtgggccattttgtccgaaaacttggtgccattggtgacaaagaaacagaaaacgaagtgttgctgttggaacgagatgtgccacacttgccgttttctgctgcggtacaaaaggatcttcctgttatgccttgggcaatcacagatgaggatgtggaatgtcgtttggatcttcgtcatattgctgtgtgtagcattgatccaccgggatgtacagatattgatgatgccttgcactggagattgctagagaatggaaactatgaggttggtgtgcacattgcagacgtgacgcatttcatcagaccaggtacagctcttgatgacgaggcagctaatagaggaaccacagtgtatctcacggataagcgtatcgacatggtaccaggacttctgagctccgacctctgttccttaagatccaatgtggacagactggcgttttcctccatttgggaaatgacaccacaggctgaaattgtctcaacgaagttcacaaaaagcattatctgttccaggatgtccttcacgtatgctgaagctcaaatgcgcattgatgatccaagccaaactgacgaaataacccagagcctgagacatcttaataaactggcaaagattctgaaagaaaagagaatcgaccagggagctctgactcttgcatcaccagaagttcgttttcatatcgacagcgagacacacgacccggtggatcttcaaacaaaggagctcaaagaaacaaattccctagtggaagagtttatgttgttagccaacatttcagtggcaaagaaaatttttcaacattttccggagtttgcagttttaagaagacatccttcgccaccgcctgcaaactatgatatattggtaaaagctgcacgttctaagggagttcaacttgaggtggacagtgccaaatccctcgcggtctctttggatgctgctaatatcccggatgagccatatttcaacactctgcttcggataatggcgacgcgatgcatgatgcaagcggtttacttctgttcaggcatgctcgctgaggaggactttcagcattatggtttggcaactccaatttacactcactttacttcaccaatcagaagatattcggacattttggtgcaccgcttgttagctgttgcaattggagctttagattcgtatccagatctcctcagcaaagtcaaaacacagaaagtgtgcaatcatctgaatttccgccacaaaatggctcagtatgcagcccgggactccatagatttgcactgtcagctgtttttccaaggaaaagccataacagaagaggaagcgtttgtcttgtttgttcgtaagaatgcgcttcaagttctgattccaaagtatggcctggagggaacagtgttcatgaacaaacaagctgaatcaggagttaacttcaatgaagaggagccttccctcagggttggtgacgtcacataccgattgtttgaccgagtggctgtgaagattcacgtggacaaatcctcaacagagaataaattcttatccttcagcctcatctccaaaaagcagtgcaggggattgtaa

Transcript

evm.model.Ap5.2950.1.5f1690d1

ATGCTCAAGTCCAAGGTATTCGTAAAGAAGACCCGCAAGGGAGGAGTAATGAAAGTAGTACGTGAACATTACTTGCGAGATGATGTGTGGTGCGGAGCAAGTCACTGTACAAACTGTGCTCAAACTGACGATAATTTACTTGATTCCACACCGCTGAGCTCTTCCAAACTATGCAGTTTTCCGCACTATTTATTACTTGATACAAACGTCGTGTTACATCAGGTAGATGTCCTGGAAGATCCAGTATTCAAAAATGTGATACTTCTACAAACTGTTTTACAAGAGGTCCAACATCTCAATAGTTCAGTGTATAAAAGAATCAGAGACATAGTATCAAGCAAACACAGGAAGTTTTTTGTTTTCTCAAATGAGCATCACAGAGAAACGTACATAGAAAGAAAAAAAGAAGAATCATCTAATGACAGAAATGATCGAGCAATAAGAGTTGCAGCAAGCTGGTATGATGAGCACTTGAAGGAATGTGAAGGAGGAAATGATGAAGATCTGAGGATAAGGATTGTTCTTCTCACCAATGACAGAGAAAACCGAGAGAAAGCTAAAAAGGAGGGAATCATAAGCTATACAGCTCAGGAGTATGTTGAAAGTCTTGAAGGATGTGAAGGTTTAGCCGACCGGCTGGCTCACACCTCCCAGCAGGGACAAGATGAGGTTGATGACAAGAAAACCAGAAAGTTGGTTTATCCTGAGCATCTTCCCCTGACAAAGATACAGGCTGGACTAAAAAGTGGCAAGTACCTACAGGGTGCATTTCACAGAAGTAGGGAAAATTACACAGAAGCTAATGTATTTGTCCATGATGACGACAAGCAGATTTTTATCCAAGGTCTGGTAAATCTCAACCGTGCGGTCCATGAAGACATTGTTGCGGTGGAGATCTTACCAAAGAAGCAATGGACCTGTCCATCATCAGTTGTAACTACAACATTACCAACTGACAATGATGATGACGATGATGGCAGTGACAATGAAAGTGACCTTACGACTGCATCACAGAAACAGGGAACAAACAAAGTGTTGTCTGGAAAAGTTGTTGGTATAATCAAAAGAAACTGGCGTCCATACTGTGGCATCCTGTCCAAGTCAGCCAAGCCACAGGGTACAAGACACTTGTTTGTGGCAGCAGAAAGAAGAATACCCAGGATAGTGATTGAAACACGTCAGGCAGCCTCACTTGAAGGGCAAAGGATTGTGGTTAGCATTGATTCATGGCCTCAGCATTCGAAATATCCAGTGGGCCATTTTGTCCGAAAACTTGGTGCCATTGGTGACAAAGAAACAGAAAACGAAGTGTTGCTGTTGGAACGAGATGTGCCACACTTGCCGTTTTCTGCTGCGGTACAAAAGGATCTTCCTGTTATGCCTTGGGCAATCACAGATGAGGATGTGGAATGTCGTTTGGATCTTCGTCATATTGCTGTGTGTAGCATTGATCCACCGGGATGTACAGATATTGATGATGCCTTGCACTGGAGATTGCTAGAGAATGGAAACTATGAGGTTGGTGTGCACATTGCAGACGTGACGCATTTCATCAGACCAGGTACAGCTCTTGATGACGAGGCAGCTAATAGAGGAACCACAGTGTATCTCACGGATAAGCGTATCGACATGGTACCAGGACTTCTGAGCTCCGACCTCTGTTCCTTAAGATCCAATGTGGACAGACTGGCGTTTTCCTCCATTTGGGAAATGACACCACAGGCTGAAATTGTCTCAACGAAGTTCACAAAAAGCATTATCTGTTCCAGGATGTCCTTCACGTATGCTGAAGCTCAAATGCGCATTGATGATCCAAGCCAAACTGACGAAATAACCCAGAGCCTGAGACATCTTAATAAACTGGCAAAGATTCTGAAAGAAAAGAGAATCGACCAGGGAGCTCTGACTCTTGCATCACCAGAAGTTCGTTTTCATATCGACAGCGAGACACACGACCCGGTGGATCTTCAAACAAAGGAGCTCAAAGAAACAAATTCCCTAGTGGAAGAGTTTATGTTGTTAGCCAACATTTCAGTGGCAAAGAAAATTTTTCAACATTTTCCGGAGTTTGCAGTTTTAAGAAGACATCCTTCGCCACCGCCTGCAAACTATGATATATTGGTAAAAGCTGCACGTTCTAAGGGAGTTCAACTTGAGGTGGACAGTGCCAAATCCCTCGCGGTCTCTTTGGATGCTGCTAATATCCCGGATGAGCCATATTTCAACACTCTGCTTCGGATAATGGCGACGCGATGCATGATGCAAGCGGTTTACTTCTGTTCAGGCATGCTCGCTGAGGAGGACTTTCAGCATTATGGTTTGGCAACTCCAATTTACACTCACTTTACTTCACCAATCAGAAGATATTCGGACATTTTGGTGCACCGCTTGTTAGCTGTTGCAATTGGAGCTTTAGATTCGTATCCAGATCTCCTCAGCAAAGTCAAAACACAGAAAGTGTGCAATCATCTGAATTTCCGCCACAAAATGGCTCAGTATGCAGCCCGGGACTCCATAGATTTGCACTGTCAGCTGTTTTTCCAAGGAAAAGCCATAACAGAAGAGGAAGCGTTTGTCTTGTTTGTTCGTAAGAATGCGCTTCAAGTTCTGATTCCAAAGTATGGCCTGGAGGGAACAGTGTTCATGAACAAACAAGCTGAATCAGGAGTTAACTTCAATGAAGAGGAGCCTTCCCTCAGGGTTGGTGACGTCACATACCGATTGTTTGACCGAGTGGCTGTGAAGATTCACGTGGACAAATCCTCAACAGAGAATAAATTCTTATCCTTCAGCCTCATCTCCAAAAAGCAGTGCAGGGGATTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CSH3	Exosome complex exonuclease RRP44 OS=Mus musculus OX=10090 GN=Dis3 PE=1 SV=4
Q9Y2L1	Exosome complex exonuclease RRP44 OS=Homo sapiens OX=9606 GN=DIS3 PE=1 SV=2
Q9SHL7	Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana OX=3702 GN=RRP44A PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001458 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13638 all species →	PIN_4	PIN domain	Domain	Interproscan
PF17216 all species →	Rrp44_CSD1	Rrp44-like cold shock domain	Domain	Interproscan
PF17215 all species →	Rrp44_S1	S1 domain	Domain	Interproscan
PF00773 all species →	RNB	RNB domain	Domain	Interproscan
PF17849 all species →	OB_Dis3	Dis3-like cold-shock domain 2 (CSD2)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR022966 all species →	Conserved_site	Ribonuclease II/R, conserved site	Interproscan
IPR002716 all species →	Domain	PIN domain	Interproscan
IPR033771 all species →	Domain	Rrp44-like cold shock domain	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR050180 all species →	Family	RNR Ribonuclease	Interproscan
IPR033770 all species →	Domain	Exosome complex exonuclease RRP44, S1 domain	Interproscan
IPR041505 all species →	Domain	Dis3-like cold-shock domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355 all species →	RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000176 all species →	Cellular Component	nuclear exosome (RNase complex)	Interproscan
GO:0000177 all species →	Cellular Component	cytoplasmic exosome (RNase complex)	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0016075 all species →	Biological Process	rRNA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12585	DIS3, RRP44; exosome complex exonuclease DIS3/RRP44	EC:3.1.13.-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.