Gene detail

Detailed information of evm.model.Ap5.2956 in Astrangia poculata

Genomic Location: Ap5:30161661...30173553
NR annotation: XP_020612043.1, uncharacterized protein LOC110050460 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2956

atgaatgcggccgtgaactcacttcactggttcaggaagggcctcaggttgcacgacaatccgtcgcttcgtcaggcaatagaaggaagttctacgttcagagcagtgtttttcctcgatgtggactccttgaacgagataaatatatcgaggaataaatggcgatttcttttggattgcttacttgatctggattgtagtcttcgcaagttgaactcgcggctgtttatcgtccgggggcagccgattgatgtctttccgaaactcattaagcagtggaatataaaaagagtaacgtttgaatacgatggcgagccattccctcaaaggcgagacgattcggtgaaacgtttacttgaatcgcaaggagtcgaagttctggtgtcaacatcgcacacactctacaatattgacgaggttgttgagttaaatcatggaaatgttccagttacgttcaaacaatttgagtgccttgtaagtaagctgaggagtccagacagctgtgtgcctgacattgaccaggatttgtttgaaaattgcaagactcctgttgaagatgatcatgacaatatttatggagtaccacaatatggtgcacttgatctggacgaggaggagcatgaacaagtggagtgggttggtggagagaaagaggctcttagaagacttgcacttttggagaaagaggttgcagaacctattacagacagtgcacaacaagagagaaattcgccatttcccaagtcttcaaagttaagtccctatctgaggtttggctgtctttcagtgaaatacctctttcacagaatgaaccaggtttacaaggaggttcatggcaaacccgctcctctgtcagttcacctgccgctcctgtggcgagagttcttctttgttgtggcgagcagacatcgcaactttgacaaaatgagaaataactccctttgtttacaattcccatgggaagagcatgctgattacttggagcactttaaacagggcaagactggttttccatggatagatgctattatgcgtcagctggtttcagaaggatggatcccccatcttgcacggcaagctgtggggtgtttcttgaccagaggagctctctggatttgctgggaagaaggatttaaaatttttgagaagttcctgttggatgctgagtggagcataaatgctggctgctggatgtggttgtcttgcagtgcattttttgctaagcatcctcagtggatgtgcccagttggcttaggagaacatctggacccacaaggcaactatgtgaggaaatatgttcctgagttaaaggattttccatcagaatatatatatgaaccttggaaggcaccactggagacacagaggacagctaactgtattgtgggtgatgattatccacagcctatcatcaatcaccaagaggcacggcgtgattgcattcacaagctgagaggagtttatcagaatctagtgagcaaggtttcctctaatgtaggattgggccacaatgcaatgcactggttcagaaaggatttgaggcttcatgacaatccctccctctgtgaagcacttacaaactgtagaacatttcatgctgtatatattattgacccagtgagtgcaagagcggccagtgtttctgctaaccgctggaaatttctcttggactgcttaaatgatcttgacaagagtttgcgtgaatgtggctcaaggcttcatgtcattcgtggacagccaacatatgtgttgcctaaacttttccaagaatggaatatttctaagctgacatttgaatgtgaaattgagccatttgggcaacggcgagatgtggctgtggctgttcttggagaagaacatggggtggaagtgatttccaaaccatcacatactctgtatgaccctgaaaaaataatagacagtaacgagggcgaggcaccgctgttgattaaaacttttgaaaatgttgtgaggcaaatgggtcctccagagaagcctgttgatgcagtcgacaaggaaatgttcaagggatgcatttgtcctgtgtccactgattacaacacaaaatttagtgttccgcacctcgatgaacttggtttcaaagatgaggatgtcactactggtgaactgtgggttggtggagaacaagaagccatcaaaagattgactgaacttgaggaaaaggtcctcataggcaatttaaagaaatcagttgaaggactagatgcattgcagccatcaaggacacagctgagtccttaccttcgatttggttgtctgtccccaaggcttttccacatgcggttgaccaaagcatacatgaaagtgaaatgccagccccctccattgtccctctacagacagctggtttggagagagttcttttttacacttgccagtcagaatcccaacatggacaaagcagttgacaatcctctttctcttaatattccttgggaggataataagaaggcacttgatgcatggaaaaagggtcagacaggctttccttggattgatgcaataatgcgacaacttcatgctgaggggtggattcaccatgtggctcgccaagctgttggatgttttttgaccaggggatgcctttggatcagctgggaagagggattcaagttgtttgaggagctacagttggattcagagtggagcttgaatgccggcaactggctttgggtgtcttgcagtgcattctttcatggccagattccatggtactgtcctgtcaatgttggcaagaaacttgatccaactggaaattttattagacgatatgtgccagagctcaagactatgccgacaaagtacatccatgagccatggctagcacccatggctttgcagaaggcaagtaactgcatcgttggtcaagattaccctgagcgtctgtgtgaccacatcgagagacggcaagtttgtcttcaacggcttaaagaagtctgtcagcagattaagggaacaaagtcgccctccaaggagagtgctgaataa

Transcript

evm.model.Ap5.2956

ATGAATGCGGCCGTGAACTCACTTCACTGGTTCAGGAAGGGCCTCAGGTTGCACGACAATCCGTCGCTTCGTCAGGCAATAGAAGGAAGTTCTACGTTCAGAGCAGTGTTTTTCCTCGATGTGGACTCCTTGAACGAGATAAATATATCGAGGAATAAATGGCGATTTCTTTTGGATTGCTTACTTGATCTGGATTGTAGTCTTCGCAAGTTGAACTCGCGGCTGTTTATCGTCCGGGGGCAGCCGATTGATGTCTTTCCGAAACTCATTAAGCAGTGGAATATAAAAAGAGTAACGTTTGAATACGATGGCGAGCCATTCCCTCAAAGGCGAGACGATTCGGTGAAACGTTTACTTGAATCGCAAGGAGTCGAAGTTCTGGTGTCAACATCGCACACACTCTACAATATTGACGAGGTTGTTGAGTTAAATCATGGAAATGTTCCAGTTACGTTCAAACAATTTGAGTGCCTTGTAAGTAAGCTGAGGAGTCCAGACAGCTGTGTGCCTGACATTGACCAGGATTTGTTTGAAAATTGCAAGACTCCTGTTGAAGATGATCATGACAATATTTATGGAGTACCACAATATGGTGCACTTGATCTGGACGAGGAGGAGCATGAACAAGTGGAGTGGGTTGGTGGAGAGAAAGAGGCTCTTAGAAGACTTGCACTTTTGGAGAAAGAGGTTGCAGAACCTATTACAGACAGTGCACAACAAGAGAGAAATTCGCCATTTCCCAAGTCTTCAAAGTTAAGTCCCTATCTGAGGTTTGGCTGTCTTTCAGTGAAATACCTCTTTCACAGAATGAACCAGGTTTACAAGGAGGTTCATGGCAAACCCGCTCCTCTGTCAGTTCACCTGCCGCTCCTGTGGCGAGAGTTCTTCTTTGTTGTGGCGAGCAGACATCGCAACTTTGACAAAATGAGAAATAACTCCCTTTGTTTACAATTCCCATGGGAAGAGCATGCTGATTACTTGGAGCACTTTAAACAGGGCAAGACTGGTTTTCCATGGATAGATGCTATTATGCGTCAGCTGGTTTCAGAAGGATGGATCCCCCATCTTGCACGGCAAGCTGTGGGGTGTTTCTTGACCAGAGGAGCTCTCTGGATTTGCTGGGAAGAAGGATTTAAAATTTTTGAGAAGTTCCTGTTGGATGCTGAGTGGAGCATAAATGCTGGCTGCTGGATGTGGTTGTCTTGCAGTGCATTTTTTGCTAAGCATCCTCAGTGGATGTGCCCAGTTGGCTTAGGAGAACATCTGGACCCACAAGGCAACTATGTGAGGAAATATGTTCCTGAGTTAAAGGATTTTCCATCAGAATATATATATGAACCTTGGAAGGCACCACTGGAGACACAGAGGACAGCTAACTGTATTGTGGGTGATGATTATCCACAGCCTATCATCAATCACCAAGAGGCACGGCGTGATTGCATTCACAAGCTGAGAGGAGTTTATCAGAATCTAGTGAGCAAGGTTTCCTCTAATGTAGGATTGGGCCACAATGCAATGCACTGGTTCAGAAAGGATTTGAGGCTTCATGACAATCCCTCCCTCTGTGAAGCACTTACAAACTGTAGAACATTTCATGCTGTATATATTATTGACCCAGTGAGTGCAAGAGCGGCCAGTGTTTCTGCTAACCGCTGGAAATTTCTCTTGGACTGCTTAAATGATCTTGACAAGAGTTTGCGTGAATGTGGCTCAAGGCTTCATGTCATTCGTGGACAGCCAACATATGTGTTGCCTAAACTTTTCCAAGAATGGAATATTTCTAAGCTGACATTTGAATGTGAAATTGAGCCATTTGGGCAACGGCGAGATGTGGCTGTGGCTGTTCTTGGAGAAGAACATGGGGTGGAAGTGATTTCCAAACCATCACATACTCTGTATGACCCTGAAAAAATAATAGACAGTAACGAGGGCGAGGCACCGCTGTTGATTAAAACTTTTGAAAATGTTGTGAGGCAAATGGGTCCTCCAGAGAAGCCTGTTGATGCAGTCGACAAGGAAATGTTCAAGGGATGCATTTGTCCTGTGTCCACTGATTACAACACAAAATTTAGTGTTCCGCACCTCGATGAACTTGGTTTCAAAGATGAGGATGTCACTACTGGTGAACTGTGGGTTGGTGGAGAACAAGAAGCCATCAAAAGATTGACTGAACTTGAGGAAAAGGTCCTCATAGGCAATTTAAAGAAATCAGTTGAAGGACTAGATGCATTGCAGCCATCAAGGACACAGCTGAGTCCTTACCTTCGATTTGGTTGTCTGTCCCCAAGGCTTTTCCACATGCGGTTGACCAAAGCATACATGAAAGTGAAATGCCAGCCCCCTCCATTGTCCCTCTACAGACAGCTGGTTTGGAGAGAGTTCTTTTTTACACTTGCCAGTCAGAATCCCAACATGGACAAAGCAGTTGACAATCCTCTTTCTCTTAATATTCCTTGGGAGGATAATAAGAAGGCACTTGATGCATGGAAAAAGGGTCAGACAGGCTTTCCTTGGATTGATGCAATAATGCGACAACTTCATGCTGAGGGGTGGATTCACCATGTGGCTCGCCAAGCTGTTGGATGTTTTTTGACCAGGGGATGCCTTTGGATCAGCTGGGAAGAGGGATTCAAGTTGTTTGAGGAGCTACAGTTGGATTCAGAGTGGAGCTTGAATGCCGGCAACTGGCTTTGGGTGTCTTGCAGTGCATTCTTTCATGGCCAGATTCCATGGTACTGTCCTGTCAATGTTGGCAAGAAACTTGATCCAACTGGAAATTTTATTAGACGATATGTGCCAGAGCTCAAGACTATGCCGACAAAGTACATCCATGAGCCATGGCTAGCACCCATGGCTTTGCAGAAGGCAAGTAACTGCATCGTTGGTCAAGATTACCCTGAGCGTCTGTGTGACCACATCGAGAGACGGCAAGTTTGTCTTCAACGGCTTAAAGAAGTCTGTCAGCAGATTAAGGGAACAAAGTCGCCCTCCAAGGAGAGTGCTGAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZZY0	Cryptochrome-1 OS=Sylvia borin OX=73324 GN=CRY1 PE=2 SV=1
Q5IZC5	Cryptochrome-1 OS=Erithacus rubecula OX=37610 GN=CRY1 PE=2 SV=2
Q16526	Cryptochrome-1 OS=Homo sapiens OX=9606 GN=CRY1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001198 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00875 all species →	DNA_photolyase	DNA photolyase	Domain	Interproscan
PF03441 all species →	FAD_binding_7	FAD binding domain of DNA photolyase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036155 all species →	Homologous_superfamily	Cryptochrome/photolyase, N-terminal domain superfamily	Interproscan
IPR006050 all species →	Domain	DNA photolyase, N-terminal	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR036134 all species →	Homologous_superfamily	Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily	Interproscan
IPR005101 all species →	Domain	Cryptochrome/DNA photolyase, FAD-binding domain	Interproscan
IPR002081 all species →	Family	Cryptochrome/DNA photolyase class 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11455 all species →	CRYPTOCHROME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032922 all species →	Biological Process	circadian regulation of gene expression	Interproscan
GO:0043153 all species →	Biological Process	entrainment of circadian clock by photoperiod	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02295	CRY; cryptochrome	-	Circadian rhythm	ko04710	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.