Gene detail

Detailed information of evm.model.Ap5.37 in Astrangia poculata

Genomic Location: Ap5:482599...491680
NR annotation: CAH3169339.1, unnamed protein product, partial [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.37

atggttccccacttcactggccgcgagacagaatgtgatgacattgttggtcacatgacttccgaatcaactcgacttgtctcagtctggggaccgtcagggattggaaaaacgtcgattgcaatctccgtggggcatcaccttcatgcacgtgatatgcccgtctattttctttcattaggtggacttaagtcaagaaacgagttagcgtcaaaaatttttagcctcttccgacagtctgtgacatttgaaactgatgagagcttatccattgatgacgagcttggtttaatttttgacagactatcagttcattgtgttgtaatcctcgacaatgctgatgacctgtttgaatgtggcgtgccaaacgtgagggaagaggttattgatttgatttgcgatcttctcaatcgcagtgacaagatcaagtttcttctaaccacgagggagtttttaccctttatgaatctacatgtccagggacacatggctgtcagaattagtcaattagacgagtcttcatctgatgccttagctcgacaactgcttccgagaacgagcgtttttaacttaacaaaagtttcacaaatctgtggggggtcgcctttagtcataaggctgatgtgttcgttcatttctgaaaagttcattgatcgttcagataacattgataaaatattggacgaaatattggactacccacgttacccaagcaatctgagattgaaagctgtatttgactcgtctttccggagactgtctactcaagaacaagaatggttgttgtccctgtgtatttttccggcgcagtttgatttaaagagtgccgcagctgttttggggataacaagaacaaccgaagcagagaaagtattgcgaaggtttttgaggagatgtcttattaatcagtgttcaaattctggaaacttctcaatgcatagaataattcagtcgtttgcaagagaaaaaaagatagcaacagcattctcagttccttcagagattcttgcccgaggacccttggctgttgaagtctacaacaaagctcttaaggatggaatgacacatgtgaaaagagtaccagtaatgttgattggacaggaaagtacaggaaagactagtctaaagaagtctttgaaaggagaaaaatttgatccactacaaaagagtacagaaggaatagagacagatccttcatattgtaaagtttcaacagagatttggagacctggtgaaaagaatccaggagtcaattctaagtctgctttgtcgtttgagcaccatgccactaaattgattgccgcaaagctaacagaagaaaactcaaattcccaggatgatggagagtcgtcagctacatttcatgataacgaatcgagcccatgtagcactgactctgaattcaccaaagaaacatccgctgatccacagctttctttcccagctgaacgtaacgacgaaaatgctgcctatgcatctgtaccacaatcacccgtaacacaattaccggatctgcagttaccggaagagatagtagcggaattggttgtaaagttgtcgcagtcaaagcttgaaatggaagaagaagaggaagatgtatattctattctgtgggattttggtggacagtcagtttactacgccactcatccaatcttcttgaccacaaaagctatctacattttggtttgcgacctaagccatagtccacacgataaagctcacccttctacgagaaaaggattgttcaaggacaaagtggatagcttctgcagcaagaccaatctggactatcttgagttttggatgtcatcagtatattctttggttaatccagacgctctctgccaggaggttactttgtgtgagggttcttccacaaaattaccccccgttttcttggtgtgcacccacgctgacgagccctatcgtaaaaccaacagtcccagagaattggctcttgaaatatttggctctttgcaagagaagatttacagtaaacacttgcatgaagatgtattcgtggtagacaacacaaaatcaggaagcggactggagtgctcagaggtcaggcgcctgaaagaggaattacgtgatgttgcccagaagttgccacagatgaaagaagccattccaataaagtggttaaagtacgaaaaggcactcaagaagatgtgcaaagaagagcgcttcaagtggatatctcttaatcaagcaaggcagattgcactcgaagtatgccaaattgctgatgacgatgagtttcatacattactgaatttcttgcatgatcaaagaattgtgatccactttaatggcactccagagttagaccaaatggtggtcttggatccccagtggctcattgatgtgtttaagaaagtgataaccgtgaagccttatgaccccaaggagaaaacatttaaggaactgtggcttaagcttgagaagacagggatcttggacgcagagctcttagatcatgtgtggaaccccctgtttgacaacaaagaaacccgtgagagccttgttgcgataatggagagatttagtttgctctgtccttggcctttctccgatgacagtaagcaatacctagttccatcaatgctgatgtcaccgccaacggacgaagccctaaggcgctctgtctctgcacagttcccctcactttttgtaaagtttgaattaggtagagtaccaccaggcctatttccccgattagtcttacagttttttcagtggagtaatgaagagtggaaataccaaataaatcccgaactgttccacagttttgctatgttttacatccgtcccgttgaaggtatctccatgacgttgctctgccatccttcttccattgaagtcattgttgacagtgaaaacatccccgaggagaatgcagatgtgattatgacaactgcccataccatccgtaggcaactggaattgatactagagcgtatgcgcaatgagttcttttggctaaggaacatgaaattcaaaatgtatgtgtgttgtccagtgtgttctcccaaaggctcagtcaactactgccgcactcatcatgtaaaaggttgcaaacaagatgaatgtctgcacttttggttggaatccgagttgcgcgagtgtcaacaacagtttgttatttgccccaggcctggtattggtgggattcccaagtttcaagtcaaccaatttgacctttggtttacatttgaacatggacaacaagagaggaatcctgctagtcagtctccgcagcacagtgtggcggagatgccaatggaaataaacatccctttacgcaaaagaaaagatttaacattcagccagcatgacacacccacggatgaggagatggaacaattgggatttgatattggcgaaacctggataacgcttggtcgtcgccttcgtgttaaggaagcaaagcttaaagaaatagatcatcgaccacatgaccggctgagagaaaagggattccagatgctactgcattggaagcaaaaggaaggttctgctgcgacttaccaggctctgtgcgaggcattaagacacgaccttgtcgggcgcaaagacttggcagaacacttttgctgccttgacggtttccatgggccaacaccaaagtcattcaagacgacagaaactcagtataccaaatga

Transcript

evm.model.Ap5.37

ATGGTTCCCCACTTCACTGGCCGCGAGACAGAATGTGATGACATTGTTGGTCACATGACTTCCGAATCAACTCGACTTGTCTCAGTCTGGGGACCGTCAGGGATTGGAAAAACGTCGATTGCAATCTCCGTGGGGCATCACCTTCATGCACGTGATATGCCCGTCTATTTTCTTTCATTAGGTGGACTTAAGTCAAGAAACGAGTTAGCGTCAAAAATTTTTAGCCTCTTCCGACAGTCTGTGACATTTGAAACTGATGAGAGCTTATCCATTGATGACGAGCTTGGTTTAATTTTTGACAGACTATCAGTTCATTGTGTTGTAATCCTCGACAATGCTGATGACCTGTTTGAATGTGGCGTGCCAAACGTGAGGGAAGAGGTTATTGATTTGATTTGCGATCTTCTCAATCGCAGTGACAAGATCAAGTTTCTTCTAACCACGAGGGAGTTTTTACCCTTTATGAATCTACATGTCCAGGGACACATGGCTGTCAGAATTAGTCAATTAGACGAGTCTTCATCTGATGCCTTAGCTCGACAACTGCTTCCGAGAACGAGCGTTTTTAACTTAACAAAAGTTTCACAAATCTGTGGGGGGTCGCCTTTAGTCATAAGGCTGATGTGTTCGTTCATTTCTGAAAAGTTCATTGATCGTTCAGATAACATTGATAAAATATTGGACGAAATATTGGACTACCCACGTTACCCAAGCAATCTGAGATTGAAAGCTGTATTTGACTCGTCTTTCCGGAGACTGTCTACTCAAGAACAAGAATGGTTGTTGTCCCTGTGTATTTTTCCGGCGCAGTTTGATTTAAAGAGTGCCGCAGCTGTTTTGGGGATAACAAGAACAACCGAAGCAGAGAAAGTATTGCGAAGGTTTTTGAGGAGATGTCTTATTAATCAGTGTTCAAATTCTGGAAACTTCTCAATGCATAGAATAATTCAGTCGTTTGCAAGAGAAAAAAAGATAGCAACAGCATTCTCAGTTCCTTCAGAGATTCTTGCCCGAGGACCCTTGGCTGTTGAAGTCTACAACAAAGCTCTTAAGGATGGAATGACACATGTGAAAAGAGTACCAGTAATGTTGATTGGACAGGAAAGTACAGGAAAGACTAGTCTAAAGAAGTCTTTGAAAGGAGAAAAATTTGATCCACTACAAAAGAGTACAGAAGGAATAGAGACAGATCCTTCATATTGTAAAGTTTCAACAGAGATTTGGAGACCTGGTGAAAAGAATCCAGGAGTCAATTCTAAGTCTGCTTTGTCGTTTGAGCACCATGCCACTAAATTGATTGCCGCAAAGCTAACAGAAGAAAACTCAAATTCCCAGGATGATGGAGAGTCGTCAGCTACATTTCATGATAACGAATCGAGCCCATGTAGCACTGACTCTGAATTCACCAAAGAAACATCCGCTGATCCACAGCTTTCTTTCCCAGCTGAACGTAACGACGAAAATGCTGCCTATGCATCTGTACCACAATCACCCGTAACACAATTACCGGATCTGCAGTTACCGGAAGAGATAGTAGCGGAATTGGTTGTAAAGTTGTCGCAGTCAAAGCTTGAAATGGAAGAAGAAGAGGAAGATGTATATTCTATTCTGTGGGATTTTGGTGGACAGTCAGTTTACTACGCCACTCATCCAATCTTCTTGACCACAAAAGCTATCTACATTTTGGTTTGCGACCTAAGCCATAGTCCACACGATAAAGCTCACCCTTCTACGAGAAAAGGATTGTTCAAGGACAAAGTGGATAGCTTCTGCAGCAAGACCAATCTGGACTATCTTGAGTTTTGGATGTCATCAGTATATTCTTTGGTTAATCCAGACGCTCTCTGCCAGGAGGTTACTTTGTGTGAGGGTTCTTCCACAAAATTACCCCCCGTTTTCTTGGTGTGCACCCACGCTGACGAGCCCTATCGTAAAACCAACAGTCCCAGAGAATTGGCTCTTGAAATATTTGGCTCTTTGCAAGAGAAGATTTACAGTAAACACTTGCATGAAGATGTATTCGTGGTAGACAACACAAAATCAGGAAGCGGACTGGAGTGCTCAGAGGTCAGGCGCCTGAAAGAGGAATTACGTGATGTTGCCCAGAAGTTGCCACAGATGAAAGAAGCCATTCCAATAAAGTGGTTAAAGTACGAAAAGGCACTCAAGAAGATGTGCAAAGAAGAGCGCTTCAAGTGGATATCTCTTAATCAAGCAAGGCAGATTGCACTCGAAGTATGCCAAATTGCTGATGACGATGAGTTTCATACATTACTGAATTTCTTGCATGATCAAAGAATTGTGATCCACTTTAATGGCACTCCAGAGTTAGACCAAATGGTGGTCTTGGATCCCCAGTGGCTCATTGATGTGTTTAAGAAAGTGATAACCGTGAAGCCTTATGACCCCAAGGAGAAAACATTTAAGGAACTGTGGCTTAAGCTTGAGAAGACAGGGATCTTGGACGCAGAGCTCTTAGATCATGTGTGGAACCCCCTGTTTGACAACAAAGAAACCCGTGAGAGCCTTGTTGCGATAATGGAGAGATTTAGTTTGCTCTGTCCTTGGCCTTTCTCCGATGACAGTAAGCAATACCTAGTTCCATCAATGCTGATGTCACCGCCAACGGACGAAGCCCTAAGGCGCTCTGTCTCTGCACAGTTCCCCTCACTTTTTGTAAAGTTTGAATTAGGTAGAGTACCACCAGGCCTATTTCCCCGATTAGTCTTACAGTTTTTTCAGTGGAGTAATGAAGAGTGGAAATACCAAATAAATCCCGAACTGTTCCACAGTTTTGCTATGTTTTACATCCGTCCCGTTGAAGGTATCTCCATGACGTTGCTCTGCCATCCTTCTTCCATTGAAGTCATTGTTGACAGTGAAAACATCCCCGAGGAGAATGCAGATGTGATTATGACAACTGCCCATACCATCCGTAGGCAACTGGAATTGATACTAGAGCGTATGCGCAATGAGTTCTTTTGGCTAAGGAACATGAAATTCAAAATGTATGTGTGTTGTCCAGTGTGTTCTCCCAAAGGCTCAGTCAACTACTGCCGCACTCATCATGTAAAAGGTTGCAAACAAGATGAATGTCTGCACTTTTGGTTGGAATCCGAGTTGCGCGAGTGTCAACAACAGTTTGTTATTTGCCCCAGGCCTGGTATTGGTGGGATTCCCAAGTTTCAAGTCAACCAATTTGACCTTTGGTTTACATTTGAACATGGACAACAAGAGAGGAATCCTGCTAGTCAGTCTCCGCAGCACAGTGTGGCGGAGATGCCAATGGAAATAAACATCCCTTTACGCAAAAGAAAAGATTTAACATTCAGCCAGCATGACACACCCACGGATGAGGAGATGGAACAATTGGGATTTGATATTGGCGAAACCTGGATAACGCTTGGTCGTCGCCTTCGTGTTAAGGAAGCAAAGCTTAAAGAAATAGATCATCGACCACATGACCGGCTGAGAGAAAAGGGATTCCAGATGCTACTGCATTGGAAGCAAAAGGAAGGTTCTGCTGCGACTTACCAGGCTCTGTGCGAGGCATTAAGACACGACCTTGTCGGGCGCAAAGACTTGGCAGAACACTTTTGCTGCCTTGACGGTTTCCATGGGCCAACACCAAAGTCATTCAAGACGACAGAAACTCAGTATACCAAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8SSS9	Probable serine/threonine-protein kinase qkgA OS=Dictyostelium discoideum OX=44689 GN=qkgA-1 PE=3 SV=2
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2
Q5S007	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF13401 all species →	AAA_22	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR049945 all species →	Domain	ORC1/DEAH AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47679 all species →	PROTEIN TORNADO 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.37.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.