Gene detail

Detailed information of evm.model.Ap5.380 in Astrangia poculata

Genomic Location: Ap5:4157904...4163626
NR annotation: XP_020613908.1, caltractin isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q06827	Caltractin OS=Scherffelia dubia OX=3190 PE=1 SV=1
P43646	Caltractin (Fragment) OS=Tetraselmis striata OX=3165 PE=2 SV=1
A0A125YHX7	Centrin-1 OS=Toxoplasma gondii (strain ATCC 50611 / Me49) OX=508771 GN=CEN1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001313 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR050145 all species →	Family	Calmodulin and Centrin Calcium-Binding Families	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23050 all species →	CALCIUM BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007099 all species →	Biological Process	centriole replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16465	CETN1; centrin-1	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.