Gene detail

Detailed information of evm.model.Ap5.392.1.5f15e30e in Astrangia poculata

Genomic Location: Ap5:4343841...4353442
NR annotation: CAH3039703.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.392.1.5f15e30e

atggttcaacggtccatgcctataaaggatttcgttgaaagcatatcctggaagagatggggttggaaagggatggaaactaaaccaggagcgattcctagtgctgttagaagctggtacagtgagataaaacacggctacgattacaatacaggtaaaggtaaaggagaagtgtctcattttaagtcagtggttcacgctcgtgaagctcgccttggctgcggtatcatcatcaaaccaggagatggaacatacgttgtagctcattattcattgggtcctgggatacaattcaagctaaatgactttagtccatccaaagacgtcggagttagaaagcagcctgctttcagagctccaaatgatgctccgaagtctggcaatggactaatgtggtcccaaccgccagctcccctgctaaagggaaatcaagttcaacagcttcaaacgcagctttcgccagttcaagattggacgaatgttgggagctgtggagcaggattgacttgtgacccgacttgccagctgctgtgcctcaagatgcataattactatcgatcacttcataatgcgcctcccatgaaatgcgacccggagctggcgaaatctgctcaagagtggaccgaccaacaggcagcagacggcaaaatgtaccactcagaatggacagacaaattcaccgagagtatttcttggagagcatggggatgggaaggaatggacaagatggagggagcaataccaggggcggtgagaggctggtattctgagatcaagaacgactacaattatcaaactggtaaagggaacggtcaagcgattggtcatttccaagcggtagtttggaaagcacagactaaactaggctgtgggctcaacatgaaaccaagtgctggaacttttgtcactgcgcactacgctccagcgtcccatgcaaacgcggagagggacaaagttgtaccgaagaatgtcacaccaagaaaaccagaagcaccggaatgtaatatccgttcagacaaacgtgttgactgctttggcgacacagcaaccgagttacaaaaagtaccttatgtgactcctgaggtctgccttcagaagggttgttgctatgacgacatggtaatgagcgagccgagcacttggttttacaaacctcctgggagaacgtggtgctttaagaaggagggaggaggagagggtcaaggacctgcaacgcagccaacccaaaaaccatcctcgcagtcgactttaccaccatccgcagggcccccaaccacaggcccatcatcagcaccaggcggtagcccgactcagcaacctacatctcagccttcttcaggaaatggtgacaaatgttttgctaattcctgttacaagtttcatgaatcaggcaaaacatgggccgagaaccaaaatacttgcaaaggtgaaggaggtgatctagtttctatggaaacggaagctgagtggcagtatatcaatagtgagattcaaaaaatcactcttccaggagttaatgaatggcacgtaggtttgaaaaaacaaggggactggaagtgggttagtggaagcccgctgaccattaagaaatggcaaagatacgagccctctggagacggaaatgccgttgttatgtcaaaggattacccaccaggatctcaaggcctattcaatgaccttaatggtcgatattccaaaccttttatttgtgaaattcccaaaggtggaactagtcagcctggacctcaacagcccacgaaacctccagtaacgccgggggcaacaagtgcaccacagggatcgacaaatgtaccaccggggcccacatctgtaccaccggtaggcgccaccacccctgcagtgggaaaaccacctggtgccggccaaccatccggtggaggaaaccaaggtatgacaggatttgaaaaggattgcttgaaggctcataacgaataccgagcaaaacatggcgttccacctctgaaatggaatgcaaaactacaagaggatgcacagaagtgggcgaactatcttactaccataaatcggatggagcatgataccggggtcggttatggtgaaaatatcgcttatttccaaccgggtgaccctacaaagatgccaatacagtgtcaagggccaaagacacccaattgtgtacagtgtcgtgaaatggtcgcagactggtacgctgaagagtcaaactttgattacaacacgggtgaaagcaaaggaggcgtcatcacacatttcactcaagtggtttggaaggcgaccacggagatgggaatggccactgccctcagtgccgacaagtggtttactgttgcacgatatacaccaaaaggaaatatgcttcctccagaaaattttaaaaagaatgtgcctagacctcagtag

Transcript

evm.model.Ap5.392.1.5f15e30e

ATGGTTCAACGGTCCATGCCTATAAAGGATTTCGTTGAAAGCATATCCTGGAAGAGATGGGGTTGGAAAGGGATGGAAACTAAACCAGGAGCGATTCCTAGTGCTGTTAGAAGCTGGTACAGTGAGATAAAACACGGCTACGATTACAATACAGGTAAAGGTAAAGGAGAAGTGTCTCATTTTAAGTCAGTGGTTCACGCTCGTGAAGCTCGCCTTGGCTGCGGTATCATCATCAAACCAGGAGATGGAACATACGTTGTAGCTCATTATTCATTGGGTCCTGGGATACAATTCAAGCTAAATGACTTTAGTCCATCCAAAGACGTCGGAGTTAGAAAGCAGCCTGCTTTCAGAGCTCCAAATGATGCTCCGAAGTCTGGCAATGGACTAATGTGGTCCCAACCGCCAGCTCCCCTGCTAAAGGGAAATCAAGTTCAACAGCTTCAAACGCAGCTTTCGCCAGTTCAAGATTGGACGAATGTTGGGAGCTGTGGAGCAGGATTGACTTGTGACCCGACTTGCCAGCTGCTGTGCCTCAAGATGCATAATTACTATCGATCACTTCATAATGCGCCTCCCATGAAATGCGACCCGGAGCTGGCGAAATCTGCTCAAGAGTGGACCGACCAACAGGCAGCAGACGGCAAAATGTACCACTCAGAATGGACAGACAAATTCACCGAGAGTATTTCTTGGAGAGCATGGGGATGGGAAGGAATGGACAAGATGGAGGGAGCAATACCAGGGGCGGTGAGAGGCTGGTATTCTGAGATCAAGAACGACTACAATTATCAAACTGGTAAAGGGAACGGTCAAGCGATTGGTCATTTCCAAGCGGTAGTTTGGAAAGCACAGACTAAACTAGGCTGTGGGCTCAACATGAAACCAAGTGCTGGAACTTTTGTCACTGCGCACTACGCTCCAGCGTCCCATGCAAACGCGGAGAGGGACAAAGTTGTACCGAAGAATGTCACACCAAGAAAACCAGAAGCACCGGAATGTAATATCCGTTCAGACAAACGTGTTGACTGCTTTGGCGACACAGCAACCGAGTTACAAAAAGTACCTTATGTGACTCCTGAGGTCTGCCTTCAGAAGGGTTGTTGCTATGACGACATGGTAATGAGCGAGCCGAGCACTTGGTTTTACAAACCTCCTGGGAGAACGTGGTGCTTTAAGAAGGAGGGAGGAGGAGAGGGTCAAGGACCTGCAACGCAGCCAACCCAAAAACCATCCTCGCAGTCGACTTTACCACCATCCGCAGGGCCCCCAACCACAGGCCCATCATCAGCACCAGGCGGTAGCCCGACTCAGCAACCTACATCTCAGCCTTCTTCAGGAAATGGTGACAAATGTTTTGCTAATTCCTGTTACAAGTTTCATGAATCAGGCAAAACATGGGCCGAGAACCAAAATACTTGCAAAGGTGAAGGAGGTGATCTAGTTTCTATGGAAACGGAAGCTGAGTGGCAGTATATCAATAGTGAGATTCAAAAAATCACTCTTCCAGGAGTTAATGAATGGCACGTAGGTTTGAAAAAACAAGGGGACTGGAAGTGGGTTAGTGGAAGCCCGCTGACCATTAAGAAATGGCAAAGATACGAGCCCTCTGGAGACGGAAATGCCGTTGTTATGTCAAAGGATTACCCACCAGGATCTCAAGGCCTATTCAATGACCTTAATGGTCGATATTCCAAACCTTTTATTTGTGAAATTCCCAAAGGTGGAACTAGTCAGCCTGGACCTCAACAGCCCACGAAACCTCCAGTAACGCCGGGGGCAACAAGTGCACCACAGGGATCGACAAATGTACCACCGGGGCCCACATCTGTACCACCGGTAGGCGCCACCACCCCTGCAGTGGGAAAACCACCTGGTGCCGGCCAACCATCCGGTGGAGGAAACCAAGGTATGACAGGATTTGAAAAGGATTGCTTGAAGGCTCATAACGAATACCGAGCAAAACATGGCGTTCCACCTCTGAAATGGAATGCAAAACTACAAGAGGATGCACAGAAGTGGGCGAACTATCTTACTACCATAAATCGGATGGAGCATGATACCGGGGTCGGTTATGGTGAAAATATCGCTTATTTCCAACCGGGTGACCCTACAAAGATGCCAATACAGTGTCAAGGGCCAAAGACACCCAATTGTGTACAGTGTCGTGAAATGGTCGCAGACTGGTACGCTGAAGAGTCAAACTTTGATTACAACACGGGTGAAAGCAAAGGAGGCGTCATCACACATTTCACTCAAGTGGTTTGGAAGGCGACCACGGAGATGGGAATGGCCACTGCCCTCAGTGCCGACAAGTGGTTTACTGTTGCACGATATACACCAAAAGGAAATATGCTTCCTCCAGAAAATTTTAAAAAGAATGTGCCTAGACCTCAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EWZ8	Ectin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q9CYL5	Golgi-associated plant pathogenesis-related protein 1 OS=Mus musculus OX=10090 GN=Glipr2 PE=1 SV=3
Q9H4G4	Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens OX=9606 GN=GLIPR2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004700 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00088 all species →	Trefoil	Trefoil (P-type) domain	Domain	Interproscan
PF00188 all species →	CAP	Cysteine-rich secretory protein family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035940 all species →	Homologous_superfamily	CAP superfamily	Interproscan
IPR000519 all species →	Domain	P-type trefoil domain	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR044913 all species →	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan
IPR001283 all species →	Family	Cysteine-rich secretory protein-related	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR014044 all species →	Domain	CAP domain	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR034113 all species →	Domain	Golgi-associated plant pathogenesis-related protein 1, SCP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10334 all species →	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.392.1.5f15e30e.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.