Detailed information of evm.model.Ap5.414 in Astrangia poculata

Genomic Location: Ap5:4561657...4562976
NR annotation: CAB4015817.1, Retrovirus-related Pol poly from transposon 412, partial [Paramuricea clavata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8I7P9Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q7LHG5Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q99315Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000062 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17921
all species →		Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF17919
all species →		RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041588
all species →		DomainIntegrase zinc-binding domainInterproscan
IPR041577
all species →		DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR043128
all species →		Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR34072
all species →		ENZYMATIC POLYPROTEIN-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap5.414. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap5.414.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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