Genomic Location: Ap5:563641...583315
NR annotation: XP_020618720.1, allene oxide synthase-lipoxygenase protein-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap5.49 |
| Transcript |
| evm.model.Ap5.49 |
| Protein |
| evm.model.Ap5.49 |
| UniProt accession | Description |
|---|---|
| O16025 | Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla OX=47982 PE=1 SV=1 |
| P51399 | Polyunsaturated fatty acid 5-lipoxygenase OS=Mesocricetus auratus OX=10036 GN=ALOX5 PE=2 SV=2 |
| P09917 | Polyunsaturated fatty acid 5-lipoxygenase OS=Homo sapiens OX=9606 GN=ALOX5 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000523 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01477 all species → | PLAT | PLAT/LH2 domain | Domain | Interproscan |
| PF00305 all species → | Lipoxygenase | Lipoxygenase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036392 all species → | Homologous_superfamily | PLAT/LH2 domain superfamily | Interproscan |
| IPR013819 all species → | Domain | Lipoxygenase, C-terminal | Interproscan |
| IPR000907 all species → | Family | Lipoxygenase | Interproscan |
| IPR001024 all species → | Domain | PLAT/LH2 domain | Interproscan |
| IPR036226 all species → | Homologous_superfamily | Lipoxigenase, C-terminal domain superfamily | Interproscan |
| IPR020835 all species → | Homologous_superfamily | Catalase superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11771 all species → | LIPOXYGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0016702 all species → | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0034440 all species → | Biological Process | lipid oxidation | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K26082 | AOS; arachidonate 8-lipoxygenase / allene oxide synthase | EC:1.13.11.40 EC:4.2.1.- | Arachidonic acid metabolism | ko00590 | deepkoala |
Transcript abundance of evm.model.Ap5.49 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
