Genomic Location: Ap5:5327414...5338457
NR annotation: XP_020610768.1, UPF0518 protein v1g243165-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap5.493 |
| Transcript |
| evm.model.Ap5.493 |
| Protein |
| evm.model.Ap5.493 |
| UniProt accession | Description |
|---|---|
| A7S6A1 | FHIP family protein v1g243165 OS=Nematostella vectensis OX=45351 GN=v1g243165 PE=3 SV=1 |
| Q8N612 | FHF complex subunit HOOK-interacting protein 1B OS=Homo sapiens OX=9606 GN=FHIP1B PE=1 SV=3 |
| Q3U2I3 | FHF complex subunit HOOK-interacting protein 1B OS=Mus musculus OX=10090 GN=Fhip1b PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007621 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF19314 all species → | DUF5917 | Family of unknown function (DUF5917) | Family | Interproscan |
| PF10257 all species → | RAI16-like | Retinoic acid induced 16-like protein | Repeat | Interproscan |
| PF19311 all species → | KELAA | KELAA motif | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045669 all species → | Domain | FHF complex subunit HOOK-interacting protein, C-terminal | Interproscan |
| IPR019384 all species → | Family | FHF complex subunit HOOK interacting protein | Interproscan |
| IPR045668 all species → | Conserved_site | FHF complex subunit HOOK-interacting protein, KELAA motif | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21705 all species → | RAI16 PROTEIN-RELATED | Interproscan |
evm.model.Ap5.493. This gene does have a gene model — the search simply returned no hit.| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K26420 | FHIP1, FAM160A; FHF complex subunit HOOK interacting protein 1 | - | Cytoskeleton proteins | ko04812 | deepkoala |
Transcript abundance of evm.model.Ap5.493 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
