Gene detail

Detailed information of evm.model.Ap5.558 in Astrangia poculata

Genomic Location: Ap5:5953400...5961100
NR annotation: XP_020629831.1, guanylate cyclase soluble subunit beta-1-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.558

atgtatggttttgtgcactgcgccctcgcggacttagtaatcagtaagtttggcgaagacgtgtggcgatcgatcatcgagaaagctggcgttgagctggatggcggttcttatcttattcacaaagtttacgatgatgaagagacgcttagcttggttgccgcggcctgcgagactttaggtctgcctttaaacgatgttttggaagcatttggcgcgcactttttggactactgcgtgcaatctggctacgatcgcattttgaaagtgctgggcagaaatctgcgggattttttgtgcaatctggatgcgcttcatgaccaccttgctacgatttatcccggaatggaagcaccgtcgttccgctgtacggagacatctgacggcaccttactattgcattactactcaaggagacagggtctagagcatattgtgatcgggattgtgaaagccgttgctaaggagatgttgaacactgaggttgtagtttcagtgaatcaagcgcgaacggacgatcatggtcatgttgtttttgcaatcagagaaaccggttgtaaaaatgcgacccattccaaactcggccttcaaacgtttgatttaaacaccgttccggggcaacagagtgttcagctgtcggataatggacagaagggtgcaaagaaacagcgcggaggtattaatctgttgtctttttgcaaagcttttccattccacgtgatgttcgatcgaaagctgaatatcacgcaaaccggagtagcaatgatgcggctcctaaacaaacgctttactaccggtgaccccttcccgttcacagacgcgttcgaattggctagaccgcgaatggaatttaccttcgaaactgtgctgtcccatatcaacacggtctttatagtctcggcaaaacagtctgcgctgagatttgcaattgcgcccgaccctacagatatccctgatggtcgaagaatgagccaagccaatccgacactgcgcctgaagggtcaaatgatatatataccgaagaacgatagtgttctatttctgtgttcgcctcgggcaagcaacctggagagctataaacagttgggaatatttttcaatgatattcccgttcacgatgctacgcgcgatcttatgttcatgtcgcaagcgaggagagccgagagagagttggtggaaaagctggaagaaactagcaacgatctaaagaaagttgaaagcaaactcacggagaacaagaaccgtacggatgatttgttgcactctattttacccccagaagtcgcggcaaaactgcggttaaatcaaccggttcccgctgaaaactacaaacttgttacaattcttttcagcgacattgttggctttacagcgttatgttccgacgacaaaattgtacctatggacattgtacggatgctgaacaagctctacacctacttcgatatgctaagcgggatgaacgatgtttacaaggtagagaccatcggtgacgcttacatggtggtgggtggtctaccaaagccatgtgacaatcacgcagagaaggtggcgcacatggcatgctcaatgatggaggcttctgaaaaggttctctcacccgtcgacaagactcctctcaggattcgcattggaattcacagtggttcagttatggctggcgttgtcggcaagatgatgcctcggtattgtttgtttggaagcacggttacactggcgaacaaaatggagtcgggcagtaaaccaggcttcatcaacgtaagctacgagaccaaacgctatcttcgagggtccactgaatttgagtttaccccaaacacggagatccccaatccactaccatgtttcttcctcaagaagagcaagaacgcaacgcaactgccttccatcatggacatcgccgcctccgtggcacctaacagcatctgcatgttcagatcaccaatggcctccccgacccactcgccatcgatgaaacgacgaagcgagactgggcccgcggcgtaccgccatatcgcgccagacgggctgcctacgcgtcgcgtgagcgctgtagacatctcaacggtcaacgagaagctagaaagcttgaggaacgatcaagaaaacaacaataaggctcccctaaaacgaagaaccacagtagccagcatgtgtccaatcttcaaatcaagctttaagaggggcgagagtattgacgaggatgaggacgatgaagaggaaattgagaatggcgacgggaaagagatcaatggcgacgcgtctctgataggaatggatgaagaatccttgacggaacttgtagagctcagccaacaaattgaggctaatttataa

Transcript

evm.model.Ap5.558

GGCAAAATAATGTATGGTTTTGTGCACTGCGCCCTCGCGGACTTAGTAATCAGTAAGTTTGGCGAAGACGTGTGGCGATCGATCATCGAGAAAGCTGGCGTTGAGCTGGATGGCGGTTCTTATCTTATTCACAAAGTTTACGATGATGAAGAGACGCTTAGCTTGGTTGCCGCGGCCTGCGAGACTTTAGGTCTGCCTTTAAACGATGTTTTGGAAGCATTTGGCGCGCACTTTTTGGACTACTGCGTGCAATCTGGCTACGATCGCATTTTGAAAGTGCTGGGCAGAAATCTGCGGGATTTTTTGTGCAATCTGGATGCGCTTCATGACCACCTTGCTACGATTTATCCCGGAATGGAAGCACCGTCGTTCCGCTGTACGGAGACATCTGACGGCACCTTACTATTGCATTACTACTCAAGGAGACAGGGTCTAGAGCATATTGTGATCGGGATTGTGAAAGCCGTTGCTAAGGAGATGTTGAACACTGAGGTTGTAGTTTCAGTGAATCAAGCGCGAACGGACGATCATGGTCATGTTGTTTTTGCAATCAGAGAAACCGGTTGTAAAAATGCGACCCATTCCAAACTCGGCCTTCAAACGTTTGATTTAAACACCGTTCCGGGGCAACAGAGTGTTCAGCTGTCGGATAATGGACAGAAGGGTGCAAAGAAACAGCGCGGAGGTATTAATCTGTTGTCTTTTTGCAAAGCTTTTCCATTCCACGTGATGTTCGATCGAAAGCTGAATATCACGCAAACCGGAGTAGCAATGATGCGGCTCCTAAACAAACGCTTTACTACCGGTGACCCCTTCCCGTTCACAGACGCGTTCGAATTGGCTAGACCGCGAATGGAATTTACCTTCGAAACTGTGCTGTCCCATATCAACACGGTCTTTATAGTCTCGGCAAAACAGTCTGCGCTGAGATTTGCAATTGCGCCCGACCCTACAGATATCCCTGATGGTCGAAGAATGAGCCAAGCCAATCCGACACTGCGCCTGAAGGGTCAAATGATATATATACCGAAGAACGATAGTGTTCTATTTCTGTGTTCGCCTCGGGCAAGCAACCTGGAGAGCTATAAACAGTTGGGAATATTTTTCAATGATATTCCCGTTCACGATGCTACGCGCGATCTTATGTTCATGTCGCAAGCGAGGAGAGCCGAGAGAGAGTTGGTGGAAAAGCTGGAAGAAACTAGCAACGATCTAAAGAAAGTTGAAAGCAAACTCACGGAGAACAAGAACCGTACGGATGATTTGTTGCACTCTATTTTACCCCCAGAAGTCGCGGCAAAACTGCGGTTAAATCAACCGGTTCCCGCTGAAAACTACAAACTTGTTACAATTCTTTTCAGCGACATTGTTGGCTTTACAGCGTTATGTTCCGACGACAAAATTGTACCTATGGACATTGTACGGATGCTGAACAAGCTCTACACCTACTTCGATATGCTAAGCGGGATGAACGATGTTTACAAGGTAGAGACCATCGGTGACGCTTACATGGTGGTGGGTGGTCTACCAAAGCCATGTGACAATCACGCAGAGAAGGTGGCGCACATGGCATGCTCAATGATGGAGGCTTCTGAAAAGGTTCTCTCACCCGTCGACAAGACTCCTCTCAGGATTCGCATTGGAATTCACAGTGGTTCAGTTATGGCTGGCGTTGTCGGCAAGATGATGCCTCGGTATTGTTTGTTTGGAAGCACGGTTACACTGGCGAACAAAATGGAGTCGGGCAGTAAACCAGGCTTCATCAACGTAAGCTACGAGACCAAACGCTATCTTCGAGGGTCCACTGAATTTGAGTTTACCCCAAACACGGAGATCCCCAATCCACTACCATGTTTCTTCCTCAAGAAGAGCAAGAACGCAACGCAACTGCCTTCCATCATGGACATCGCCGCCTCCGTGGCACCTAACAGCATCTGCATGTTCAGATCACCAATGGCCTCCCCGACCCACTCGCCATCGATGAAACGACGAAGCGAGACTGGGCCCGCGGCGTACCGCCATATCGCGCCAGACGGGCTGCCTACGCGTCGCGTGAGCGCTGTAGACATCTCAACGGTCAACGAGAAGCTAGAAAGCTTGAGGAACGATCAAGAAAACAACAATAAGGCTCCCCTAAAACGAAGAACCACAGTAGCCAGCATGTGTCCAATCTTCAAATCAAGCTTTAAGAGGGGCGAGAGTATTGACGAGGATGAGGACGATGAAGAGGAAATTGAGAATGGCGACGGGAAAGAGATCAATGGCGACGCGTCTCTGATAGGAATGGATGAAGAATCCTTGACGGAACTTGTAGAGCTCAGCCAACAAATTGAGGCTAATTTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P16068	Guanylate cyclase soluble subunit beta-1 OS=Bos taurus OX=9913 GN=GUCY1B1 PE=1 SV=1
O54865	Guanylate cyclase soluble subunit beta-1 OS=Mus musculus OX=10090 GN=Gucy1b1 PE=1 SV=1
Q4ZHR9	Guanylate cyclase soluble subunit beta-1 OS=Canis lupus familiaris OX=9615 GN=GUCY1B1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001319 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00211 all species →	Guanylate_cyc	Adenylate and Guanylate cyclase catalytic domain	Domain	Interproscan
PF07700 all species →	HNOB	Haem-NO-binding	Domain	Interproscan
PF07701 all species →	HNOBA	Heme NO binding associated	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038158 all species →	Homologous_superfamily	H-NOX domain superfamily	Interproscan
IPR042463 all species →	Homologous_superfamily	Haem NO binding associated domain superfamily	Interproscan
IPR029787 all species →	Homologous_superfamily	Nucleotide cyclase	Interproscan
IPR001054 all species →	Domain	Adenylyl cyclase class-3/4/guanylyl cyclase	Interproscan
IPR011644 all species →	Domain	Heme NO-binding	Interproscan
IPR011645 all species →	Domain	Haem NO binding associated	Interproscan
IPR024096 all species →	Homologous_superfamily	NO signalling/Golgi transport ligand-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45655 all species →	GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0009190 all species →	Biological Process	cyclic nucleotide biosynthetic process	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0004383 all species →	Molecular Function	guanylate cyclase activity	Interproscan
GO:0008074 all species →	Cellular Component	guanylate cyclase complex, soluble	Interproscan
GO:0019934 all species →	Biological Process	cGMP-mediated signaling	Interproscan
GO:0070482 all species →	Biological Process	response to oxygen levels	Interproscan
GO:0006182 all species →	Biological Process	cGMP biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.558.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.