Gene detail

Detailed information of evm.model.Ap5.6 in Astrangia poculata

Genomic Location: Ap5:45268...61672
NR annotation: XP_020618912.1, uncharacterized protein LOC110056738 isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.6

atggcagcaaacagacgtcttacggcagtgtcaggtcatctccacccgagcttgtctaatggggaaaaatatcggcgatatcttgtggacgatttacgaaagcgaggagtgaatgatgtggagctttctggtccaccatcttgttatgaagtcgaatatcagactcttctcaccccagaggcactgaactttgttgttgaacttgtgagacagtttgacaataatgtggaacagatgctaagatatcgaaccataaggaaactgcatctaaacgactcgggtgaactgctatacttccagccacaaagtgcagaagtcagggataaaacctggaaggtgttgcctgttccacccagactgcagtgcagagcagtagatcttggagacatctctcctgctaatacagaactctttatgaaggcacttaattcaccagcttgtggtatacagactgatcttgatgatggccattgcccttcctggtcaaatcagttacgaggactttacaacatctaccagtttgtacatggaaatatgagagatcatttaacgtacttgcactatcctcattttcatttctttgggagatttcgtgcagacacagctacattaaacaatttcccaaatctattcaacccggaagacttcgagcaaagtcagatacagccaagctctgaaaactggaatcctatggggagtggggagtggactgttgaagctgaagtgacccaggtgtgttattccgactatcggtgcgtggggaatctgcctgaagataaactttatggggctcgtataacaggagggggaacaagagtgccagcaaaactcgttgaccttgatccacaagcccacaagtttgcagaagtccggggatggaggattctcgtgggagaatttttctcagcagattttctacctgctccgttccagtatcgttgggtgaagacagcgaactcttcggacggtgatgcagaacaggcagcagcagggcagtcacagctgacaaacatcatctggaatgagaccaatataaaaaaatccacaatcttgaaggagttaaagagaaaatctagcggaaagctgtctattcgattcaatatggattcattcaacgaattcccacaacaaccatattttggctggggacgcataacaggtacaattggcctggctggtcttcaatcctcgccatttacgcctggtgaaagaatcctaaaagctcaaagggaaggtctccaagacgccccattcgtgttagacaaaaaagccaagaagctgactgtcgattttgggaatagcctaccaatcatgaaaaatggaagccataacgtgagttttatagaccagcttctcgtggcgataccaagaagaccggtggctcaagacaataagcctgtctcctgcgcagatgatctacaagctcttggcgttgtactttaccgcatagacaactggtacaaaaactccgccggtgtgacttcgtttccaccaatcggagttttatccgacgaggaaatggaaagacttgagaatacacccctcgttattgcagaggtcgaaggaacatggcccgcagtacaatgcaagagaatcctgttttctgaggccacagatggcattcaagtccatccctttacaacctgggtgctgagagcagaaccaggagaaagcgtggaaatatctttcctggccacgaaatttggagtcccgtcagccggaacggtaatccatattaaaccatttgtttgcaataaaatattttgcgaatatggtggccctacaattggaacggacccccttccttttgatgcgagggactgcccaaccaatgaacgtggattggccaccataacatctacggctcctgatccttcgaaagcaaggaagttcatagatggtcagctgtatccgtacgtttattggccagagagcaatcctatcgacccaaagcaaacttgtgatggaagcaatttcttgtaccttcttaactcgtattttattattcgagttttcgacaagtttaactacgtagatcctccaacctggaatgacgatgtgtatcccatttttaaaacatacgctaatttgtatcccataatgacactgaattacgtcgatcttggcaactattacgaagttaccaaacacatttctgacatcaaaatgacgatgaatcttccaaacacccatcccaactacatgccagtaactcgcgacttatcgaaagacaaacatgacatgatcttaacatggctagaccatccttgccctggtgaagaaaaggaggattttacaattgaaaggttacgccagctccttcagacagccctagaaatagaacatgccaccataccaacatatctaactgcgctggccacgataaaagagaattacaacatagaagtacaagatatcttcagacagatccttatacaagaaatgctgcacttggcgcttgctgcaaacctcttaaacgcagttggtggaaaacctgtgctgttttctgccaactttttacctctctatcccacccgacttcccggtggtctgatgccaacgttgcaagttccaatagaaaagtgcaccactgctctgattgcgaatatctttatggcaattgaacaaccttcgatcacggaggatgtcgataccagctctgagccttctacgccagaagaggaagaggaagacatcacacctggagctgatccaaacaaacatctgaaggttacaggacagtacgatacaaaaggagactcgagcttttcgaaaaaggtgaagaaatgtggaactattccattacagaatcatttgtctcttgctgagacagaagtggcgctagctgtcgtggcaaagtttgcggccttcacaacatttacagaactacgtattatgaaggggggacccagttacccaggcgagaacaagccaatactccacaaacattacaacacaattggagaattctacgaacacattctgcgtgcttttgagtttttgacaaaaaatggtaagaacaatgctatattcaccggagatgaatccaagcagctttgttttgatttttcctttggccgctatggaaaattaatcaaggttaccgatttcgtaagcgccaaacaagccatccaagagattatcagggaaggagaaggcagctctccgtgtaatccatttgattggaagaacgacaagggtgacctgtcccattatttcctgtttaagtccattgttgaaggtcatagaataaaggtttgtagctccagcgatgaaagatccggaaacgatgatccaactgctggatttagaaaagaggccatgccttactttaagatctgccatggcgagtactttttcaatggatctgaaattttctttgatccggaaggtgtatggccaatggtaaataaccctcgcctgagaaagctcgtaccagggtctcgcgcagacgttttgaacagagaattcaacaagctttatacaaacctcctcagatcccttgaagttacgtttaatggtcacccacataaattcgatgacgcacggggattaatgttttcaatagacaggcatctgaagaggctcgtccgtacaccgctggaacaagatggagatccgactgttgggccaaacgcagggccaacctttgagtttattcctgattag

Transcript

evm.model.Ap5.6

ATGGCAGCAAACAGACGTCTTACGGCAGTGTCAGGTCATCTCCACCCGAGCTTGTCTAATGGGGAAAAATATCGGCGATATCTTGTGGACGATTTACGAAAGCGAGGAGTGAATGATGTGGAGCTTTCTGGTCCACCATCTTGTTATGAAGTCGAATATCAGACTCTTCTCACCCCAGAGGCACTGAACTTTGTTGTTGAACTTGTGAGACAGTTTGACAATAATGTGGAACAGATGCTAAGATATCGAACCATAAGGAAACTGCATCTAAACGACTCGGGTGAACTGCTATACTTCCAGCCACAAAGTGCAGAAGTCAGGGATAAAACCTGGAAGGTGTTGCCTGTTCCACCCAGACTGCAGTGCAGAGCAGTAGATCTTGGAGACATCTCTCCTGCTAATACAGAACTCTTTATGAAGGCACTTAATTCACCAGCTTGTGGTATACAGACTGATCTTGATGATGGCCATTGCCCTTCCTGGTCAAATCAGTTACGAGGACTTTACAACATCTACCAGTTTGTACATGGAAATATGAGAGATCATTTAACGTACTTGCACTATCCTCATTTTCATTTCTTTGGGAGATTTCGTGCAGACACAGCTACATTAAACAATTTCCCAAATCTATTCAACCCGGAAGACTTCGAGCAAAGTCAGATACAGCCAAGCTCTGAAAACTGGAATCCTATGGGGAGTGGGGAGTGGACTGTTGAAGCTGAAGTGACCCAGGTGTGTTATTCCGACTATCGGTGCGTGGGGAATCTGCCTGAAGATAAACTTTATGGGGCTCGTATAACAGGAGGGGGAACAAGAGTGCCAGCAAAACTCGTTGACCTTGATCCACAAGCCCACAAGTTTGCAGAAGTCCGGGGATGGAGGATTCTCGTGGGAGAATTTTTCTCAGCAGATTTTCTACCTGCTCCGTTCCAGTATCGTTGGGTGAAGACAGCGAACTCTTCGGACGGTGATGCAGAACAGGCAGCAGCAGGGCAGTCACAGCTGACAAACATCATCTGGAATGAGACCAATATAAAAAAATCCACAATCTTGAAGGAGTTAAAGAGAAAATCTAGCGGAAAGCTGTCTATTCGATTCAATATGGATTCATTCAACGAATTCCCACAACAACCATATTTTGGCTGGGGACGCATAACAGGTACAATTGGCCTGGCTGGTCTTCAATCCTCGCCATTTACGCCTGGTGAAAGAATCCTAAAAGCTCAAAGGGAAGGTCTCCAAGACGCCCCATTCGTGTTAGACAAAAAAGCCAAGAAGCTGACTGTCGATTTTGGGAATAGCCTACCAATCATGAAAAATGGAAGCCATAACGTGAGTTTTATAGACCAGCTTCTCGTGGCGATACCAAGAAGACCGGTGGCTCAAGACAATAAGCCTGTCTCCTGCGCAGATGATCTACAAGCTCTTGGCGTTGTACTTTACCGCATAGACAACTGGTACAAAAACTCCGCCGGTGTGACTTCGTTTCCACCAATCGGAGTTTTATCCGACGAGGAAATGGAAAGACTTGAGAATACACCCCTCGTTATTGCAGAGGTCGAAGGAACATGGCCCGCAGTACAATGCAAGAGAATCCTGTTTTCTGAGGCCACAGATGGCATTCAAGTCCATCCCTTTACAACCTGGGTGCTGAGAGCAGAACCAGGAGAAAGCGTGGAAATATCTTTCCTGGCCACGAAATTTGGAGTCCCGTCAGCCGGAACGGTAATCCATATTAAACCATTTGTTTGCAATAAAATATTTTGCGAATATGGTGGCCCTACAATTGGAACGGACCCCCTTCCTTTTGATGCGAGGGACTGCCCAACCAATGAACGTGGATTGGCCACCATAACATCTACGGCTCCTGATCCTTCGAAAGCAAGGAAGTTCATAGATGGTCAGCTGTATCCGTACGTTTATTGGCCAGAGAGCAATCCTATCGACCCAAAGCAAACTTGTGATGGAAGCAATTTCTTGTACCTTCTTAACTCGTATTTTATTATTCGAGTTTTCGACAAGTTTAACTACGTAGATCCTCCAACCTGGAATGACGATGTGTATCCCATTTTTAAAACATACGCTAATTTGTATCCCATAATGACACTGAATTACGTCGATCTTGGCAACTATTACGAAGTTACCAAACACATTTCTGACATCAAAATGACGATGAATCTTCCAAACACCCATCCCAACTACATGCCAGTAACTCGCGACTTATCGAAAGACAAACATGACATGATCTTAACATGGCTAGACCATCCTTGCCCTGGTGAAGAAAAGGAGGATTTTACAATTGAAAGGTTACGCCAGCTCCTTCAGACAGCCCTAGAAATAGAACATGCCACCATACCAACATATCTAACTGCGCTGGCCACGATAAAAGAGAATTACAACATAGAAGTACAAGATATCTTCAGACAGATCCTTATACAAGAAATGCTGCACTTGGCGCTTGCTGCAAACCTCTTAAACGCAGTTGGTGGAAAACCTGTGCTGTTTTCTGCCAACTTTTTACCTCTCTATCCCACCCGACTTCCCGGTGGTCTGATGCCAACGTTGCAAGTTCCAATAGAAAAGTGCACCACTGCTCTGATTGCGAATATCTTTATGGCAATTGAACAACCTTCGATCACGGAGGATGTCGATACCAGCTCTGAGCCTTCTACGCCAGAAGAGGAAGAGGAAGACATCACACCTGGAGCTGATCCAAACAAACATCTGAAGGTTACAGGACAGTACGATACAAAAGGAGACTCGAGCTTTTCGAAAAAGGTGAAGAAATGTGGAACTATTCCATTACAGAATCATTTGTCTCTTGCTGAGACAGAAGTGGCGCTAGCTGTCGTGGCAAAGTTTGCGGCCTTCACAACATTTACAGAACTACGTATTATGAAGGGGGGACCCAGTTACCCAGGCGAGAACAAGCCAATACTCCACAAACATTACAACACAATTGGAGAATTCTACGAACACATTCTGCGTGCTTTTGAGTTTTTGACAAAAAATGGTAAGAACAATGCTATATTCACCGGAGATGAATCCAAGCAGCTTTGTTTTGATTTTTCCTTTGGCCGCTATGGAAAATTAATCAAGGTTACCGATTTCGTAAGCGCCAAACAAGCCATCCAAGAGATTATCAGGGAAGGAGAAGGCAGCTCTCCGTGTAATCCATTTGATTGGAAGAACGACAAGGGTGACCTGTCCCATTATTTCCTGTTTAAGTCCATTGTTGAAGGTCATAGAATAAAGGTTTGTAGCTCCAGCGATGAAAGATCCGGAAACGATGATCCAACTGCTGGATTTAGAAAAGAGGCCATGCCTTACTTTAAGATCTGCCATGGCGAGTACTTTTTCAATGGATCTGAAATTTTCTTTGATCCGGAAGGTGTATGGCCAATGGTAAATAACCCTCGCCTGAGAAAGCTCGTACCAGGGTCTCGCGCAGACGTTTTGAACAGAGAATTCAACAAGCTTTATACAAACCTCCTCAGATCCCTTGAAGTTACGTTTAATGGTCACCCACATAAATTCGATGACGCACGGGGATTAATGTTTTCAATAGACAGGCATCTGAAGAGGCTCGTCCGTACACCGCTGGAACAAGATGGAGATCCGACTGTTGGGCCAAACGCAGGGCCAACCTTTGAGTTTATTCCTGATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P95329	Malate synthase OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=mls PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001181 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12902 all species →	Ferritin-like	Ferritin-like	Domain	Interproscan
PF20656 all species →	MS_N	Malate synthase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026820 all species →	Domain	Iminophenyl-pyruvate dimer synthase	Interproscan
IPR046363 all species →	Homologous_superfamily	Malate synthase, N-terminal and TIM-barrel domains	Interproscan
IPR009078 all species →	Homologous_superfamily	Ferritin-like superfamily	Interproscan
IPR048356 all species →	Domain	Malate synthase, N-terminal domain	Interproscan
IPR012347 all species →	Homologous_superfamily	Ferritin-like	Interproscan
IPR011076 all species →	Homologous_superfamily	Malate synthase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34400 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.6.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.