Detailed information of evm.model.Ap5.613 in Astrangia poculata

Genomic Location: Ap5:6506065...6507336
NR annotation: XP_020603830.1, E3 ubiquitin-protein ligase TRIM71-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000277 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17170
all species →		DUF51286-bladed beta-propellerRepeatInterproscan
PF01436
all species →		NHLNHL repeatRepeatInterproscan
PF00630
all species →		FilaminFilamin/ABP280 repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050952
all species →		FamilyTripartite Motif and NHL Repeat Containing E3 LigasesInterproscan
IPR017868
all species →		RepeatFilamin/ABP280 repeat-likeInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR011042
all species →		Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR001258
all species →		RepeatNHL repeatInterproscan
IPR001298
all species →		RepeatFilamin/ABP280 repeatInterproscan
IPR014756
all species →		Homologous_superfamilyImmunoglobulin E-setInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24104
all species →		E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap5.613.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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