Gene detail

Detailed information of evm.model.Ap5.622 in Astrangia poculata

Genomic Location: Ap5:6537513...6544323
NR annotation: XP_020603958.1, acetylserotonin O-methyltransferase-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.622

atgggtgctttcaacggagacacaggtcatccttcagacagcccttcaacaactggccctcccggcccccctggcccaagaggttcgattggccctactgggcaaaaaggcgacactggtccacaaggcccccaaggtcctactggtcctgctggtcctcaaggttctcgcggtcctactggccccgctggcccaaaaggcgacactggtcctcaaggcccccaaggcccaactggctcaagaggtttcgttggtcaaaaaggcgataaaggtgacagcggcccaactggctctactggtcctgccggtccacaagggccccaaggtgcaactggctctgctggccccgtcggtgcaactggtcctgctggccctgcgggtccaaaaggtgaaacaggtccaactgatccccctggtgccactgggcctgccggacatactgggcctgctggaacaaaagggccaaaaggtgatgccggcccaactggtcctgctggtccacaaggtcccgctggcataaaaggtgaccctggacaaatgggtgttgttaatcaaaatttggtaatgaacgaccattcaatcaaacagcttgctaatcccgtcggtgaccaagacgctgtaaacttagtttcaatgcaaaagtatgtttcaactcactcaatttcttcaggagtaaacgaaaatttgttttcacatttgtttttttctgcatcttcttttcaaggtgttacaaatgttatctcattaacagttgttgacaattttacctctggtgttcacttactcaaagaaagcgcttttcgttttaatttagtaaaatctggaaacagtttcaattcaagacttaaaatcggcctaaccgggttgccctctggtgattacactctttgtgttgagtttttcttcccagaaagtgatcttaactggagtttaagtgcttcgtcaccttttggaagtaacactgtcaattatcatacaaaaagattcaacaatcacacgccaaaatatacgagaacaatcattcactcacaaaaaaatgcgtcaaacagtgacgataaactttttattgacataaccaatcctggttactcggggtcacaagcaagtgagcaagcttatttgattgcttatggtgtaaagggttatcaagcggacgtgccaagcgatgtttttgaaaaaccttttattatttcttctggagacatggtgcttgaaacgaatattgatatgaatgggtttgagttaaaaaactattttccaaaaatattgaattttgtcataaacggtttttatgatggaaccgatggtacaattactcttgggggtggttttcacccaagttctgttgttttttattcggttaaatttaattttaatttaaattactttattatgcccgttgatggaagaattgaagaatggcagtttcttattttaagtaaaaaagatgataatgttgtaaatgatgaagtacaggtggtgatcaaggttcaaacagaaaatggtgaaagggggtcagccacacgcagtccaaccgtttctaatttccaaaaacaggacctagtttcattagaagcatcaaaaggagacaaaattttggccgcaatttcaaataaaaacggagcaataaatacaaaaacagaagggtacctttacgcacctattaatgctctgaggaaatatctgatttgtttatatgcacgcatgctcagtgatgacatggacagcatagatggtaccacaagtgttgcaggtggaacaggagctacggcatacactttgtgtcagtactaccctaacatgaagatcacagtgtgtgacatgcagtcagttgtggacctcacccatcattttcgtccgtcttcagaagattgccccaatcaaggaaatgtttcttatgtagtgggcaatttctttcagcctgatctgccaaaggctgatttgtatgtgttgtcccgcatactgcatgattggtctgaagaaaaagtggatttaatactttcaaatgtgttcaagtgtttgccttcaggtggtggtcttcttatttcagaaatgttgttgaacgaagacaaaactggaagtaaaggtgctcttcttcagtcccttaacatgcttgtgaccatggaaggcaaggaacgatcagcaacagaatacaagaaacttttagaaaagcaaggatttgttgatattcaaacaaaacagctcaagttatcttcaggattagatgccattttatgtagaaaggtttga

Transcript

evm.model.Ap5.622

ATGGGTGCTTTCAACGGAGACACAGGTCATCCTTCAGACAGCCCTTCAACAACTGGCCCTCCCGGCCCCCCTGGCCCAAGAGGTTCGATTGGCCCTACTGGGCAAAAAGGCGACACTGGTCCACAAGGCCCCCAAGGTCCTACTGGTCCTGCTGGTCCTCAAGGTTCTCGCGGTCCTACTGGCCCCGCTGGCCCAAAAGGCGACACTGGTCCTCAAGGCCCCCAAGGCCCAACTGGCTCAAGAGGTTTCGTTGGTCAAAAAGGCGATAAAGGTGACAGCGGCCCAACTGGCTCTACTGGTCCTGCCGGTCCACAAGGGCCCCAAGGTGCAACTGGCTCTGCTGGCCCCGTCGGTGCAACTGGTCCTGCTGGCCCTGCGGGTCCAAAAGGTGAAACAGGTCCAACTGATCCCCCTGGTGCCACTGGGCCTGCCGGACATACTGGGCCTGCTGGAACAAAAGGGCCAAAAGGTGATGCCGGCCCAACTGGTCCTGCTGGTCCACAAGGTCCCGCTGGCATAAAAGGTGACCCTGGACAAATGGGTGTTGTTAATCAAAATTTGGTAATGAACGACCATTCAATCAAACAGCTTGCTAATCCCGTCGGTGACCAAGACGCTGTAAACTTAGTTTCAATGCAAAAGTATGTTTCAACTCACTCAATTTCTTCAGGAGTAAACGAAAATTTGTTTTCACATTTGTTTTTTTCTGCATCTTCTTTTCAAGGTGTTACAAATGTTATCTCATTAACAGTTGTTGACAATTTTACCTCTGGTGTTCACTTACTCAAAGAAAGCGCTTTTCGTTTTAATTTAGTAAAATCTGGAAACAGTTTCAATTCAAGACTTAAAATCGGCCTAACCGGGTTGCCCTCTGGTGATTACACTCTTTGTGTTGAGTTTTTCTTCCCAGAAAGTGATCTTAACTGGAGTTTAAGTGCTTCGTCACCTTTTGGAAGTAACACTGTCAATTATCATACAAAAAGATTCAACAATCACACGCCAAAATATACGAGAACAATCATTCACTCACAAAAAAATGCGTCAAACAGTGACGATAAACTTTTTATTGACATAACCAATCCTGGTTACTCGGGGTCACAAGCAAGTGAGCAAGCTTATTTGATTGCTTATGGTGTAAAGGGTTATCAAGCGGACGTGCCAAGCGATGTTTTTGAAAAACCTTTTATTATTTCTTCTGGAGACATGGTGCTTGAAACGAATATTGATATGAATGGGTTTGAGTTAAAAAACTATTTTCCAAAAATATTGAATTTTGTCATAAACGGTTTTTATGATGGAACCGATGGTACAATTACTCTTGGGGGTGGTTTTCACCCAAGTTCTGTTGTTTTTTATTCGGTTAAATTTAATTTTAATTTAAATTACTTTATTATGCCCGTTGATGGAAGAATTGAAGAATGGCAGTTTCTTATTTTAAGTAAAAAAGATGATAATGTTGTAAATGATGAAGTACAGGTGGTGATCAAGGTTCAAACAGAAAATGGTGAAAGGGGGTCAGCCACACGCAGTCCAACCGTTTCTAATTTCCAAAAACAGGACCTAGTTTCATTAGAAGCATCAAAAGGAGACAAAATTTTGGCCGCAATTTCAAATAAAAACGGAGCAATAAATACAAAAACAGAAGGGTACCTTTACGCACCTATTAATGCTCTGAGGAAATATCTGATTTGTTTATATGCACGCATGCTCAGTGATGACATGGACAGCATAGATGGTACCACAAGTGTTGCAGGTGGAACAGGAGCTACGGCATACACTTTGTGTCAGTACTACCCTAACATGAAGATCACAGTGTGTGACATGCAGTCAGTTGTGGACCTCACCCATCATTTTCGTCCGTCTTCAGAAGATTGCCCCAATCAAGGAAATGTTTCTTATGTAGTGGGCAATTTCTTTCAGCCTGATCTGCCAAAGGCTGATTTGTATGTGTTGTCCCGCATACTGCATGATTGGTCTGAAGAAAAAGTGGATTTAATACTTTCAAATGTGTTCAAGTGTTTGCCTTCAGGTGGTGGTCTTCTTATTTCAGAAATGTTGTTGAACGAAGACAAAACTGGAAGTAAAGGTGCTCTTCTTCAGTCCCTTAACATGCTTGTGACCATGGAAGGCAAGGAACGATCAGCAACAGAATACAAGAAACTTTTAGAAAAGCAAGGATTTGTTGATATTCAAACAAAACAGCTCAAGTTATCTTCAGGATTAGATGCCATTTTATGTAGAAAGGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95671	Probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein OS=Homo sapiens OX=9606 GN=ASMTL PE=1 SV=3
Q92056	Acetylserotonin O-methyltransferase OS=Gallus gallus OX=9031 GN=ASMT PE=1 SV=1
P10950	Acetylserotonin O-methyltransferase OS=Bos taurus OX=9913 GN=ASMT PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001138 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF00891 all species →	Methyltransf_2	O-methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016461 all species →	Family	O-methyltransferase COMT-type	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR050149 all species →	Family	Collagen superfamily	Interproscan
IPR001077 all species →	Domain	O-methyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030020 all species →	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.622.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.