Gene detail

Detailed information of evm.model.Ap5.643 in Astrangia poculata

Genomic Location: Ap5:6702724...6715317
NR annotation: XP_022799711.1, protein SGT1 homolog isoform X1 [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KIK0	Protein SGT1 homolog OS=Bos taurus OX=9913 GN=SUGT1 PE=2 SV=1
B0BN85	Protein SGT1 homolog OS=Rattus norvegicus OX=10116 GN=Sugt1 PE=2 SV=1
Q9CX34	Protein SGT1 homolog OS=Mus musculus OX=10090 GN=Sugt1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005164 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF04969 all species →	CS	CS domain	Domain	Interproscan
PF05002 all species →	SGS	SGS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007052 all species →	Domain	CS domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR044563 all species →	Family	Protein Sgt1-like	Interproscan
IPR007699 all species →	Domain	SGS domain	Interproscan
IPR008978 all species →	Homologous_superfamily	HSP20-like chaperone	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45862 all species →	PROTEIN SGT1 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12795	SUGT1, SGT1; suppressor of G2 allele of SKP1	-	Plant-pathogen interaction	ko04626	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.