Gene detail

Detailed information of evm.model.Ap5.689 in Astrangia poculata

Genomic Location: Ap5:7151345...7168058
NR annotation: XP_020601256.1, uncharacterized protein LOC110040369 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.689

atggctgacaagagcacctttgtaggtgcaagattacgggtcgccacaagcgaaggagaatacgagggaacagttcacagcatagatgcagataaaagaaagcttacgttaactaaagtggtctcatgcagtacaggaagaaagctacatggttttcaccatttctttggtcacgaactcaatacattggaattgctggaaggagcaaataataaccattcacacaatgaacaaacagaaaagaagaagattaatgatactaaggaagatgaaagaaggcatgaacaaaacccagacacttcacagcctaatcattcaatgccaacatcactcaaacctgatgtaggatttggaggaagaggaatagcaagggcttttaaagatgctggtataggaataaattcaaaattgggagtcaagaagacagccgttgccagtggatctttatcaagagatgtgagtgacgaaggcgacagtcttctgaagaggcagcctattgtagcagagaagtatctttctgatatgctatcagatgacgatgaaaaggaaaatgttagtcctgatggcctacctgctattgtgcctattgatacttttggagagtcatttgaggaagcagtgaaattcgtaaagagacagagagtcattggagtatgctgtgagggtgtcaaccttggtagacttgggaaactttgctggcttgtgattggttgtagcaaggttatctacttgtttgatgttcttactcttggagctccttgttttgatgaaggattacaagacattcttgagagtggtgatatattgaaggtattccatgactgcaggcaggccagtgatggcctgtaccatcaatataatatccgactcatcaatgtgtttgatactcaggtagcagatgtcattatttttaagaatgaaaaaggaggagagttacccagacacgtgaatggtttagtagcttgtttgtatgaatacctgaatttgtcaccagaaaatgtcaattttcagaaagtgcgtcaaaaatatatgcagagaagtgactccatatgggcagaaagacccgccccaaaagcccttgttgatgctgcagccaaacatgtgatgtatcttcgggaactccggctcgctcagatggagcgccttatggctgaatttctttacggagttgatatttacttgagcctcatcagagatgccaaagatctgaaccccagggtgaaaggccagctgctacctgccaaatttcgagagttggaccgctttaattacaggcagcgctcaaggagatacgacggagactttcacgaggatgcaaaagaaggggtaccagaggatgtgcttgctagtcgggcggcctggtacgaaggagacaatttcgcgcaagagtatcagaataaaaaggggcgcgtcaaggaaagacagtatgagcttcctgacccagtccccgccccgcctaacccagtccacgctccgtctaacccagtccccactccggtggataggctgcggcagacattgcgcgagagcgggagtgatactgaagcaagtagtgtaagtacagaaggcagtggttttaataagagaccaatagctcaaggacaagcggctacggttcctactgttaaatcgactcctgttttagttccatctcttgaacagcggatctttacagagaacgacttccctccgttgagcagttctgaatcggaggggcctggaacgcctcctcgacaaacgtccatgaaaaaccccaggaaacaacagtctcggaattttcaagccgagggaagactggagagaaacagaagtggacaggctcgcgctctggagcctgggctccaatctaactcaccggaatcgcatttttcactgcaaggcgctaatgcacttttaagagaaaccgcttctcttcctggccgtgggcgcgcaggcgccttgttacgtcacgcagctatgcccgcacttcgtttacccaccgacgaccatgtgccgggctataatcgttatgagcaagttggtgcccagcgttacgagacaagaaggaatgaattccattttcctgccgatgaagaccttcttgctgccccagaagttgtcccagttcccaaacatcagattgtcggagggacacaaataaagattaggccggcgtga

Transcript

evm.model.Ap5.689

ATGGCTGACAAGAGCACCTTTGTAGGTGCAAGATTACGGGTCGCCACAAGCGAAGGAGAATACGAGGGAACAGTTCACAGCATAGATGCAGATAAAAGAAAGCTTACGTTAACTAAAGTGGTCTCATGCAGTACAGGAAGAAAGCTACATGGTTTTCACCATTTCTTTGGTCACGAACTCAATACATTGGAATTGCTGGAAGGAGCAAATAATAACCATTCACACAATGAACAAACAGAAAAGAAGAAGATTAATGATACTAAGGAAGATGAAAGAAGGCATGAACAAAACCCAGACACTTCACAGCCTAATCATTCAATGCCAACATCACTCAAACCTGATGTAGGATTTGGAGGAAGAGGAATAGCAAGGGCTTTTAAAGATGCTGGTATAGGAATAAATTCAAAATTGGGAGTCAAGAAGACAGCCGTTGCCAGTGGATCTTTATCAAGAGATGTGAGTGACGAAGGCGACAGTCTTCTGAAGAGGCAGCCTATTGTAGCAGAGAAGTATCTTTCTGATATGCTATCAGATGACGATGAAAAGGAAAATGTTAGTCCTGATGGCCTACCTGCTATTGTGCCTATTGATACTTTTGGAGAGTCATTTGAGGAAGCAGTGAAATTCGTAAAGAGACAGAGAGTCATTGGAGTATGCTGTGAGGGTGTCAACCTTGGTAGACTTGGGAAACTTTGCTGGCTTGTGATTGGTTGTAGCAAGGTTATCTACTTGTTTGATGTTCTTACTCTTGGAGCTCCTTGTTTTGATGAAGGATTACAAGACATTCTTGAGAGTGGTGATATATTGAAGGTATTCCATGACTGCAGGCAGGCCAGTGATGGCCTGTACCATCAATATAATATCCGACTCATCAATGTGTTTGATACTCAGGTAGCAGATGTCATTATTTTTAAGAATGAAAAAGGAGGAGAGTTACCCAGACACGTGAATGGTTTAGTAGCTTGTTTGTATGAATACCTGAATTTGTCACCAGAAAATGTCAATTTTCAGAAAGTGCGTCAAAAATATATGCAGAGAAGTGACTCCATATGGGCAGAAAGACCCGCCCCAAAAGCCCTTGTTGATGCTGCAGCCAAACATGTGATGTATCTTCGGGAACTCCGGCTCGCTCAGATGGAGCGCCTTATGGCTGAATTTCTTTACGGAGTTGATATTTACTTGAGCCTCATCAGAGATGCCAAAGATCTGAACCCCAGGGTGAAAGGCCAGCTGCTACCTGCCAAATTTCGAGAGTTGGACCGCTTTAATTACAGGCAGCGCTCAAGGAGATACGACGGAGACTTTCACGAGGATGCAAAAGAAGGGGTACCAGAGGATGTGCTTGCTAGTCGGGCGGCCTGGTACGAAGGAGACAATTTCGCGCAAGAGTATCAGAATAAAAAGGGGCGCGTCAAGGAAAGACAGTATGAGCTTCCTGACCCAGTCCCCGCCCCGCCTAACCCAGTCCACGCTCCGTCTAACCCAGTCCCCACTCCGGTGGATAGGCTGCGGCAGACATTGCGCGAGAGCGGGAGTGATACTGAAGCAAGTAGTGTAAGTACAGAAGGCAGTGGTTTTAATAAGAGACCAATAGCTCAAGGACAAGCGGCTACGGTTCCTACTGTTAAATCGACTCCTGTTTTAGTTCCATCTCTTGAACAGCGGATCTTTACAGAGAACGACTTCCCTCCGTTGAGCAGTTCTGAATCGGAGGGGCCTGGAACGCCTCCTCGACAAACGTCCATGAAAAACCCCAGGAAACAACAGTCTCGGAATTTTCAAGCCGAGGGAAGACTGGAGAGAAACAGAAGTGGACAGGCTCGCGCTCTGGAGCCTGGGCTCCAATCTAACTCACCGGAATCGCATTTTTCACTGCAAGGCGCTAATGCACTTTTAAGAGAAACCGCTTCTCTTCCTGGCCGTGGGCGCGCAGGCGCCTTGTTACGTCACGCAGCTATGCCCGCACTTCGTTTACCCACCGACGACCATGTGCCGGGCTATAATCGTTATGAGCAAGTTGGTGCCCAGCGTTACGAGACAAGAAGGAATGAATTCCATTTTCCTGCCGATGAAGACCTTCTTGCTGCCCCAGAAGTTGTCCCAGTTCCCAAACATCAGATTGTCGGAGGGACACAAATAAAGATTAGGCCGGCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P3U3	piRNA biogenesis protein EXD1 OS=Danio rerio OX=7955 GN=exd1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005267 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01612 all species →	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002562 all species →	Domain	3'-5' exonuclease domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR052144 all species →	Family	piRNA biogenesis EXD1-related protein	Interproscan
IPR025609 all species →	Domain	Lsm14-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46628 all species →	PIRNA BIOGENESIS PROTEIN EXD1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan
GO:1990923 all species →	Cellular Component	PET complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18740	EXD1, EGL; exonuclease 3'-5' domain-containing protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.