Genomic Location: Ap5:7247599...7301433
NR annotation: CAH3025850.1, unnamed protein product [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap5.695 |
| Transcript |
| evm.model.Ap5.695 |
| Protein |
| evm.model.Ap5.695 |
| UniProt accession | Description |
|---|---|
| Q923Q2 | StAR-related lipid transfer protein 13 OS=Mus musculus OX=10090 GN=Stard13 PE=1 SV=5 |
| Q9Y3M8 | StAR-related lipid transfer protein 13 OS=Homo sapiens OX=9606 GN=STARD13 PE=1 SV=2 |
| Q9R0Z9 | Rho GTPase-activating protein 7 OS=Mus musculus OX=10090 GN=Dlc1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001725 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00620 all species → | RhoGAP | RhoGAP domain | Domain | Interproscan |
| PF01852 all species → | START | START domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000198 all species → | Domain | Rho GTPase-activating protein domain | Interproscan |
| IPR002913 all species → | Domain | START domain | Interproscan |
| IPR008936 all species → | Homologous_superfamily | Rho GTPase activation protein | Interproscan |
| IPR013761 all species → | Homologous_superfamily | Sterile alpha motif/pointed domain superfamily | Interproscan |
| IPR023393 all species → | Homologous_superfamily | START-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12659 all species → | RHO-TYPE GTPASE ACTIVATING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0008289 all species → | Molecular Function | lipid binding | Interproscan |
| GO:0005096 all species → | Molecular Function | GTPase activator activity | Interproscan |
| GO:0030036 all species → | Biological Process | actin cytoskeleton organization | Interproscan |
| GO:0035023 all species → | Biological Process | regulation of Rho protein signal transduction | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20631 | ARHGAP6; Rho GTPase-activating protein 6 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of evm.model.Ap5.695 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
