Gene detail

Detailed information of evm.model.Ap5.707 in Astrangia poculata

Genomic Location: Ap5:7402632...7419471
NR annotation: XP_020628934.1, ribonucleoside-diphosphate reductase large subunit-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.707

atgtctgacaatcaagagcatgagacttcagctgaatcgttgcacacctacgtagtcaaacgcaataaaaagcgccaacagatttatctggacaaaatcactgctcggatctcaagacagagctatggcctgtctgagtttgtagaaacgtttgaaattaccaagaaagttatagatggaatctacccgggagtgcaaacgacagagctggacaccctggctgccgagactgccgcttccatgacaaccgtacaccctgattatgctatccttgcagccaggattgaagtttcgaatcttcacaaggaaacagagaaggttttcagtgaggtgatgacagctctgtacaacttcgtcaaccctaagaatggcaaacattctccactgatctcaaaggatactcatgaaatcattatgaagaatgctgataaactcaatgctgccatcatttatgatcgcgactaccactacaattactttgggtttaagactttgatgagatcttacctacttaagattgacggcaaagttgccgagcgaccacagcacatgctgatgcgagtttcagttggaatccaccagaatgatatcgacgctgccattgaaacctacaatctgatgtctgagaagtggttcacgcatgcgtcgccgacactgttcaatgccggcacttgtaaaccacagttgtcgagctgtttcttactgacaatgtcagacgatagcattgacggcatttatgaaacgctgacaacttgtgccagaatttccaaatcagctggaggaattggtatcaacatgcacaatatcagagcttctgggagctacatagcagggaccaatggaacctcaaatggtcttgtaccaatgctgcgtgtttataacgctacagcaaggtatgttgaccaaggaggtaacaagagaccaggagcatttgccatttaccttgaaccctggcacagcgacatctttgatttcttggacctgagaaagaacacaggcaaagaggaacagcgtgcacgtgacctgttctatgctctgtggattcctgacctgttcatgagacgtgtggagagcgatgggatgtggtccctgatgtgccctaacgagtgtcctggactacaggactgctggggagaaaaatttgacaagctttatgaaagctatgaggagcaaggaaagtttccacaaatcaaagccggctttggtttgaattttggaagcgcagatagagacgggcccaaccgtacatgctgtacaaagatcgtgcaacagaaaaaaccaacagaattttggggaccatcaaatgcagcaatctttgcactaaaatttgtgctgtttgaggtcacccaggtggtgacacgcaacttaaacaagattattgatatcaactattatccagtaaaagaggctgaaagatcaaacaagagacacaggccaattggcattggagtacagggaatggctgacgccttcatcctaatgagatatccatttgaaagccctgaagcccgagaattgaacaaaaaaatatttgagacaatttactatggtgcactgacagcatcctgccagttggccaaagaaaagggagtctatgaaacgtatgaaggatctcctgcaagccaagggaaacttcagtatgatctttggggagtaacaccttcagatctgtgggactgggcagcactcaaggcagacattaaaaagtatgggataaggaacagtttattgttggcacccatgccgacagcttccacagcacagattcttggtaacaatgagtcttttgagccatacacgagcaacatctactcaagacgtgttctctcaggagaatttcagattgtgaaccatcatctgcttaaggacttgacagagagaggactgtggaatgaaacattgaaaaacaaacttgtggctgctaacggatcaattcagcatattgatgagatccctgatgatcttaagccactgtacaagacagtttgggagatttcccagaggactctcatagacatggcggctgacagaggagcattcattgaccagagtcagtccttcaatgtgttcttcgctgaacccaactatggcaagctgaccagtatgcacttctatggctggggaaagggcctcaagacaggaatgtattacctgcgcacacgccccgctgcaaatgcgattcagtttacagtggatcaggaatccctcaagaagtcaaccaagaccaaagcacagaaagaagaagctatcgcttgctcccttaaaaatcccgaggcttgtgtaagctgcagtggataa

Transcript

evm.model.Ap5.707

ATGTCTGACAATCAAGAGCATGAGACTTCAGCTGAATCGTTGCACACCTACGTAGTCAAACGCAATAAAAAGCGCCAACAGATTTATCTGGACAAAATCACTGCTCGGATCTCAAGACAGAGCTATGGCCTGTCTGAGTTTGTAGAAACGTTTGAAATTACCAAGAAAGTTATAGATGGAATCTACCCGGGAGTGCAAACGACAGAGCTGGACACCCTGGCTGCCGAGACTGCCGCTTCCATGACAACCGTACACCCTGATTATGCTATCCTTGCAGCCAGGATTGAAGTTTCGAATCTTCACAAGGAAACAGAGAAGGTTTTCAGTGAGGTGATGACAGCTCTGTACAACTTCGTCAACCCTAAGAATGGCAAACATTCTCCACTGATCTCAAAGGATACTCATGAAATCATTATGAAGAATGCTGATAAACTCAATGCTGCCATCATTTATGATCGCGACTACCACTACAATTACTTTGGGTTTAAGACTTTGATGAGATCTTACCTACTTAAGATTGACGGCAAAGTTGCCGAGCGACCACAGCACATGCTGATGCGAGTTTCAGTTGGAATCCACCAGAATGATATCGACGCTGCCATTGAAACCTACAATCTGATGTCTGAGAAGTGGTTCACGCATGCGTCGCCGACACTGTTCAATGCCGGCACTTGTAAACCACAGTTGTCGAGCTGTTTCTTACTGACAATGTCAGACGATAGCATTGACGGCATTTATGAAACGCTGACAACTTGTGCCAGAATTTCCAAATCAGCTGGAGGAATTGGTATCAACATGCACAATATCAGAGCTTCTGGGAGCTACATAGCAGGGACCAATGGAACCTCAAATGGTCTTGTACCAATGCTGCGTGTTTATAACGCTACAGCAAGGTATGTTGACCAAGGAGGTAACAAGAGACCAGGAGCATTTGCCATTTACCTTGAACCCTGGCACAGCGACATCTTTGATTTCTTGGACCTGAGAAAGAACACAGGCAAAGAGGAACAGCGTGCACGTGACCTGTTCTATGCTCTGTGGATTCCTGACCTGTTCATGAGACGTGTGGAGAGCGATGGGATGTGGTCCCTGATGTGCCCTAACGAGTGTCCTGGACTACAGGACTGCTGGGGAGAAAAATTTGACAAGCTTTATGAAAGCTATGAGGAGCAAGGAAAGTTTCCACAAATCAAAGCCGGCTTTGGTTTGAATTTTGGAAGCGCAGATAGAGACGGGCCCAACCGTACATGCTGTACAAAGATCGTGCAACAGAAAAAACCAACAGAATTTTGGGGACCATCAAATGCAGCAATCTTTGCACTAAAATTTGTGCTGTTTGAGGTCACCCAGGTGGTGACACGCAACTTAAACAAGATTATTGATATCAACTATTATCCAGTAAAAGAGGCTGAAAGATCAAACAAGAGACACAGGCCAATTGGCATTGGAGTACAGGGAATGGCTGACGCCTTCATCCTAATGAGATATCCATTTGAAAGCCCTGAAGCCCGAGAATTGAACAAAAAAATATTTGAGACAATTTACTATGGTGCACTGACAGCATCCTGCCAGTTGGCCAAAGAAAAGGGAGTCTATGAAACGTATGAAGGATCTCCTGCAAGCCAAGGGAAACTTCAGTATGATCTTTGGGGAGTAACACCTTCAGATCTGTGGGACTGGGCAGCACTCAAGGCAGACATTAAAAAGTATGGGATAAGGAACAGTTTATTGTTGGCACCCATGCCGACAGCTTCCACAGCACAGATTCTTGGTAACAATGAGTCTTTTGAGCCATACACGAGCAACATCTACTCAAGACGTGTTCTCTCAGGAGAATTTCAGATTGTGAACCATCATCTGCTTAAGGACTTGACAGAGAGAGGACTGTGGAATGAAACATTGAAAAACAAACTTGTGGCTGCTAACGGATCAATTCAGCATATTGATGAGATCCCTGATGATCTTAAGCCACTGTACAAGACAGTTTGGGAGATTTCCCAGAGGACTCTCATAGACATGGCGGCTGACAGAGGAGCATTCATTGACCAGAGTCAGTCCTTCAATGTGTTCTTCGCTGAACCCAACTATGGCAAGCTGACCAGTATGCACTTCTATGGCTGGGGAAAGGGCCTCAAGACAGGAATGTATTACCTGCGCACACGCCCCGCTGCAAATGCGATTCAGTTTACAGTGGATCAGGAATCCCTCAAGAAGTCAACCAAGACCAAAGCACAGAAAGAAGAAGCTATCGCTTGCTCCCTTAAAAATCCCGAGGCTTGTGTAAGCTGCAGTGGATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07742	Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus OX=10090 GN=Rrm1 PE=1 SV=2
P23921	Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens OX=9606 GN=RRM1 PE=1 SV=1
Q5R919	Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii OX=9601 GN=RRM1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003633 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03477 all species →	ATP-cone	ATP cone domain	Domain	Interproscan
PF00317 all species →	Ribonuc_red_lgN	Ribonucleotide reductase, all-alpha domain	Domain	Interproscan
PF02867 all species →	Ribonuc_red_lgC	Ribonucleotide reductase, barrel domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005144 all species →	Domain	ATP-cone domain	Interproscan
IPR013509 all species →	Domain	Ribonucleotide reductase large subunit, N-terminal	Interproscan
IPR000788 all species →	Domain	Ribonucleotide reductase large subunit, C-terminal	Interproscan
IPR013346 all species →	Domain	Ribonucleotide reductase, class I, alpha subunit, C-terminal	Interproscan
IPR039718 all species →	Family	Ribonucleoside-diphosphate reductase large subunit	Interproscan
IPR008926 all species →	Homologous_superfamily	Ribonucleotide reductase R1 subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11573 all species →	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004748 all species →	Molecular Function	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0009263 all species →	Biological Process	deoxyribonucleotide biosynthetic process	Interproscan
GO:0005971 all species →	Cellular Component	ribonucleoside-diphosphate reductase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.707.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.