Gene detail

Detailed information of evm.model.Ap5.777 in Astrangia poculata

Genomic Location: Ap5:7990251...8009736
NR annotation: XP_020601337.1, RNA polymerase II degradation factor 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.777

atgccttcttcgaacatcaaacgcaagaaaaagccgggtccaattaacaatgctcccagtaacggcggcggtagcaattacaccgaaacggccatggacgagtatttggctcgcttagacttgtacagaaagccaattgccaaagatggatcctgtcttttcagagctgtgtctgagcaggtttacaactgtcaagccaaacatcttaaagttcgtaaggactgcatagattttatgcgaagaaacagggataagtttgaagcgtttctggaaggaccatttgatcatcacttgtttagactgcaaaacccaaaggaatgggcaggacaagttgagatcagtgctctgtcactcatgtacaagaaagactttgttgtttaccaagccattgatgcagaaccaacaaaagtgactgacaacaactttaaagacaagattatgctctgttattccaatggaaaccattatgatgctgtttatgacgtgaaattccaaaagaatgcagctgtctgccagtccttgatgtacgagattttgtaccagaaggtgttcacagagcttgacaggaaatacaataccagaaaaggacctgcacagactccagccaatgatgcaaacagtgctatgacgagctattatcagaatggtcttggagaagatgatacgttcaaggatgagggtgaagacaatgctggctggacagaggttgtcagaggcagatcaaacaaagctaaatctgctcggcagaacagaggatttgaccaagaggagccaaaagaggagcccatgaaaccaaatcttgaccagaaacatggatggcaagccaaacgatccctggacaacgagctgtatcgcaatgtggagttggaagtctgggaggattctaaaaatgctcaagagcaacaggatcagtcttatgctgcaagtattcagtaccagccaggagataaatgctttgcatggttggggcagcctgatgtttcagacaaagtttatgaggctattgtcaaatattaccttcctgtgcaaggcaatattgaagtgcagatcccagaacttggaaataaatgctttctgattcctcttgaaaacctgaagcctactgagaaccaacaagagctaaactacagagatttgtcaggcttctacaagaaatctgaagctgggggaggtccaccgggaagtaatgaaggtttgcgagatgatgggaaaagggggaggagaagaaatatgccaggaagacctccaagaggttacaagggagatgaacaaagtgaggacacagctgctcggaagggtttccaggatgaatcaggcttcccaaggccaagaccaggtccacgtgatcgtgacaagtttggaagaggaagaggacggggccgctaccccagagggcgagatgacagacaactacaaagggaagatgaggaagccaggctgattgcagaacaagccaagctggcagaattacaaggaaaagatccagcagctttcccagctttgccaactcaacaagcagaagagaagcctccctccactgaagctgccccggatcaaagccctgcagagttctggagtcgtttgaagaacactcaaggaaagccgccacccacactcaaagaaaaccatgtgaacgcaacagacaacaaaccttcaagcgcaccaacttcaccaaccagtcaacagccacacatggccaaaccggaagagaaagaactggaaactaagaaggagagaccgccgaccaatgaggttaaagcaccaggggctcagaatagtgaagtcgtaaacaggatagtagagaataagactcctgaagcaagcagtaaccatgttccactggaaacgagcaaaaaggaacagagcgagtctcaaaaacaaaccatgcctttagaaaaggagccgtcgaaaggcaaggctgaacattcaaagggtcttcacttgaatgagataaagcaacaagcaacgtctgcatctccgtcggtagaggtgaaaaatgtttttccgaagtctaatgttgaggaagtaaagttagcagatgttgctgaggtaagaaatgcctgggcaaaggaaccaactgaaaagaaagaaataaaaacacaggacaaaactccagaaaataacatcaaagatatagaaccagatataaagaaacctgaagaacctccttctgtcaaaccacaaggagtgagaggcgtgatccgtatgaccaattttaataacaaaccacaacaggctgccgagactggagagcaggaggagacgcagaaggaagagattaaattgttaagaaaggaggattctgttgctaaagaagtaccaaacctcaaatctgccctagcaggggaaggctctgtgtcttctactccagagaaaaagactgtgacatttgctgagccccttaatgaaggtggcgaaattaaagttcttgtgagcacagcaaaggagttagctggtaaagatggcaagagagaagtgcttgctcctccaacgttagtctcggtcgtaatgaaaccagctccgtcttcggaaattgcacaagacaatttgtcagttactctgatgactaataacaagcctgacaagaacaccggcgaagatgacgccgcaaacgccaaaacctccaccacaaaccaagatacaaacactaaactacagacccccaccgctaccccctcagacagcaaccaaggcagtgaaggagcagaatccgcaccctctagctccccctcagtttcccagcaccaagccgtgtatcagctgccttttcttcctgtgatgtacacacagttgccgaacatgaccagtcatcctcgcttgcctcaaggaatatccatggaaagcgatggctctgatctgccagaagaccccaatacgcttcgatatttcttcaatcttggattccagtaccacctccaactgaaccagcagtgggcaaaccaacagatgatgtactacggcccgtcaatgtatcagatgccttcacaggatcacatgcagcctcaccctgcagtgtctatgggtcagcagcttaatcctggagtgccacaagtgatctatcaggcccaacagatgcagggatatcacccggctcaaatcccaccagtaatgcaagagaacacaagcttctctgagcgtaactccatggataggagtagtcccggacaaacacaacaacaacagcaacagcagcagacacaacaacagcaacaacaacaacagcccatccctctgcaccaggccccaccgtttgtgcctaaccaacatcatacgtggcgagcggcgcggtcgatgactgggtaccagggcaaacagatgcacatgggtggatacaactcacaggtggcaaatcagcagacgcctcgcgggcccatgcaacaaggtgccggcaataccaagccgcattataaaaccaagaaatacccgaaacaccgcgaccagttcatgtacggtgcgcagtctcagcatgcgcagaatcaaggggcgcctgtgcatggtgcgcatgcgtataccaacgccacccaaaccgctggttcgtcttctagcgccttctatatgcccggcagcgaccacgctgccgggaaagggtctggggactactaccatagcaaccagcaatttgtgaacccttatggaaatgtgtcatcgagcatgacacaagctccgcactccgctgccaactcgcgggggcagtatccgtaa

Transcript

evm.model.Ap5.777

ATGCCTTCTTCGAACATCAAACGCAAGAAAAAGCCGGGTCCAATTAACAATGCTCCCAGTAACGGCGGCGGTAGCAATTACACCGAAACGGCCATGGACGAGTATTTGGCTCGCTTAGACTTGTACAGAAAGCCAATTGCCAAAGATGGATCCTGTCTTTTCAGAGCTGTGTCTGAGCAGGTTTACAACTGTCAAGCCAAACATCTTAAAGTTCGTAAGGACTGCATAGATTTTATGCGAAGAAACAGGGATAAGTTTGAAGCGTTTCTGGAAGGACCATTTGATCATCACTTGTTTAGACTGCAAAACCCAAAGGAATGGGCAGGACAAGTTGAGATCAGTGCTCTGTCACTCATGTACAAGAAAGACTTTGTTGTTTACCAAGCCATTGATGCAGAACCAACAAAAGTGACTGACAACAACTTTAAAGACAAGATTATGCTCTGTTATTCCAATGGAAACCATTATGATGCTGTTTATGACGTGAAATTCCAAAAGAATGCAGCTGTCTGCCAGTCCTTGATGTACGAGATTTTGTACCAGAAGGTGTTCACAGAGCTTGACAGGAAATACAATACCAGAAAAGGACCTGCACAGACTCCAGCCAATGATGCAAACAGTGCTATGACGAGCTATTATCAGAATGGTCTTGGAGAAGATGATACGTTCAAGGATGAGGGTGAAGACAATGCTGGCTGGACAGAGGTTGTCAGAGGCAGATCAAACAAAGCTAAATCTGCTCGGCAGAACAGAGGATTTGACCAAGAGGAGCCAAAAGAGGAGCCCATGAAACCAAATCTTGACCAGAAACATGGATGGCAAGCCAAACGATCCCTGGACAACGAGCTGTATCGCAATGTGGAGTTGGAAGTCTGGGAGGATTCTAAAAATGCTCAAGAGCAACAGGATCAGTCTTATGCTGCAAGTATTCAGTACCAGCCAGGAGATAAATGCTTTGCATGGTTGGGGCAGCCTGATGTTTCAGACAAAGTTTATGAGGCTATTGTCAAATATTACCTTCCTGTGCAAGGCAATATTGAAGTGCAGATCCCAGAACTTGGAAATAAATGCTTTCTGATTCCTCTTGAAAACCTGAAGCCTACTGAGAACCAACAAGAGCTAAACTACAGAGATTTGTCAGGCTTCTACAAGAAATCTGAAGCTGGGGGAGGTCCACCGGGAAGTAATGAAGGTTTGCGAGATGATGGGAAAAGGGGGAGGAGAAGAAATATGCCAGGAAGACCTCCAAGAGGTTACAAGGGAGATGAACAAAGTGAGGACACAGCTGCTCGGAAGGGTTTCCAGGATGAATCAGGCTTCCCAAGGCCAAGACCAGGTCCACGTGATCGTGACAAGTTTGGAAGAGGAAGAGGACGGGGCCGCTACCCCAGAGGGCGAGATGACAGACAACTACAAAGGGAAGATGAGGAAGCCAGGCTGATTGCAGAACAAGCCAAGCTGGCAGAATTACAAGGAAAAGATCCAGCAGCTTTCCCAGCTTTGCCAACTCAACAAGCAGAAGAGAAGCCTCCCTCCACTGAAGCTGCCCCGGATCAAAGCCCTGCAGAGTTCTGGAGTCGTTTGAAGAACACTCAAGGAAAGCCGCCACCCACACTCAAAGAAAACCATGTGAACGCAACAGACAACAAACCTTCAAGCGCACCAACTTCACCAACCAGTCAACAGCCACACATGGCCAAACCGGAAGAGAAAGAACTGGAAACTAAGAAGGAGAGACCGCCGACCAATGAGGTTAAAGCACCAGGGGCTCAGAATAGTGAAGTCGTAAACAGGATAGTAGAGAATAAGACTCCTGAAGCAAGCAGTAACCATGTTCCACTGGAAACGAGCAAAAAGGAACAGAGCGAGTCTCAAAAACAAACCATGCCTTTAGAAAAGGAGCCGTCGAAAGGCAAGGCTGAACATTCAAAGGGTCTTCACTTGAATGAGATAAAGCAACAAGCAACGTCTGCATCTCCGTCGGTAGAGGTGAAAAATGTTTTTCCGAAGTCTAATGTTGAGGAAGTAAAGTTAGCAGATGTTGCTGAGGTAAGAAATGCCTGGGCAAAGGAACCAACTGAAAAGAAAGAAATAAAAACACAGGACAAAACTCCAGAAAATAACATCAAAGATATAGAACCAGATATAAAGAAACCTGAAGAACCTCCTTCTGTCAAACCACAAGGAGTGAGAGGCGTGATCCGTATGACCAATTTTAATAACAAACCACAACAGGCTGCCGAGACTGGAGAGCAGGAGGAGACGCAGAAGGAAGAGATTAAATTGTTAAGAAAGGAGGATTCTGTTGCTAAAGAAGTACCAAACCTCAAATCTGCCCTAGCAGGGGAAGGCTCTGTGTCTTCTACTCCAGAGAAAAAGACTGTGACATTTGCTGAGCCCCTTAATGAAGGTGGCGAAATTAAAGTTCTTGTGAGCACAGCAAAGGAGTTAGCTGGTAAAGATGGCAAGAGAGAAGTGCTTGCTCCTCCAACGTTAGTCTCGGTCGTAATGAAACCAGCTCCGTCTTCGGAAATTGCACAAGACAATTTGTCAGTTACTCTGATGACTAATAACAAGCCTGACAAGAACACCGGCGAAGATGACGCCGCAAACGCCAAAACCTCCACCACAAACCAAGATACAAACACTAAACTACAGACCCCCACCGCTACCCCCTCAGACAGCAACCAAGGCAGTGAAGGAGCAGAATCCGCACCCTCTAGCTCCCCCTCAGTTTCCCAGCACCAAGCCGTGTATCAGCTGCCTTTTCTTCCTGTGATGTACACACAGTTGCCGAACATGACCAGTCATCCTCGCTTGCCTCAAGGAATATCCATGGAAAGCGATGGCTCTGATCTGCCAGAAGACCCCAATACGCTTCGATATTTCTTCAATCTTGGATTCCAGTACCACCTCCAACTGAACCAGCAGTGGGCAAACCAACAGATGATGTACTACGGCCCGTCAATGTATCAGATGCCTTCACAGGATCACATGCAGCCTCACCCTGCAGTGTCTATGGGTCAGCAGCTTAATCCTGGAGTGCCACAAGTGATCTATCAGGCCCAACAGATGCAGGGATATCACCCGGCTCAAATCCCACCAGTAATGCAAGAGAACACAAGCTTCTCTGAGCGTAACTCCATGGATAGGAGTAGTCCCGGACAAACACAACAACAACAGCAACAGCAGCAGACACAACAACAGCAACAACAACAACAGCCCATCCCTCTGCACCAGGCCCCACCGTTTGTGCCTAACCAACATCATACGTGGCGAGCGGCGCGGTCGATGACTGGGTACCAGGGCAAACAGATGCACATGGGTGGATACAACTCACAGGTGGCAAATCAGCAGACGCCTCGCGGGCCCATGCAACAAGGTGCCGGCAATACCAAGCCGCATTATAAAACCAAGAAATACCCGAAACACCGCGACCAGTTCATGTACGGTGCGCAGTCTCAGCATGCGCAGAATCAAGGGGCGCCTGTGCATGGTGCGCATGCGTATACCAACGCCACCCAAACCGCTGGTTCGTCTTCTAGCGCCTTCTATATGCCCGGCAGCGACCACGCTGCCGGGAAAGGGTCTGGGGACTACTACCATAGCAACCAGCAATTTGTGAACCCTTATGGAAATGTGTCATCGAGCATGACACAAGCTCCGCACTCCGCTGCCAACTCGCGGGGGCAGTATCCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01804	OTU domain-containing protein 4 OS=Homo sapiens OX=9606 GN=OTUD4 PE=1 SV=4
B2RRE7	OTU domain-containing protein 4 OS=Mus musculus OX=10090 GN=Otud4 PE=1 SV=1
Q9NP73	UDP-N-acetylglucosamine transferase subunit ALG13 OS=Homo sapiens OX=9606 GN=ALG13 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003653 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR049770 all species →	Domain	Protein ovarian tumor locus, Tudor domain	Interproscan
IPR050704 all species →	Family	OTU domain-containing ubiquitin thioesterase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12419 all species →	OTU DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13718	OTUD4; OTU domain-containing protein 4	EC:3.4.19.12	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.