Gene detail

Detailed information of evm.model.Ap5.852 in Astrangia poculata

Genomic Location: Ap5:8849104...8851957
NR annotation: XP_020603179.1, uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.852

atgaactcttccactgcaccaagcttatcttctattggatcaagaatgaccactgttaggctttcgtcaccgcaaataaagagcactacagtcacgcagagtaacgctacaacgatcacgcgtttagtcacgtcagagaaccgcactgttgtagtcacacctagttttgtaaagtcatcgttaagctctgaagtcacgcaagtcaattctacggccagtaggaatttgtcagtgtcattgatcagctctgttgtcaatcggaacagttcagagtttactcagagtagtataactcctaggacgttaatcagccgtagtgtcacgccaactagtgtcactgattcattagtcgacgtcacgccatcttcagttgtttctccagtgacatcatcaagagctgattccacgtctgaaatgagatcatcgcgagtaaacgccagtatgacatctaccgtgatatcaagagtgtcagtaagcgtgacgtctctggtaaagccaagcgtaacttctgatgtgacatcaagcgtgatcaggagccagacttttagctttcaaacagagttgattgacacgtcacgcctcgcaaaaccatcctcggtcatttctttagtgtcgatctcaattccagtctcgatttcgcaaatgtcatctccgctgagatcgacagcgaaatcagttttcagcgtgacactatcctcaggtcagccgtcttttaagactgcgttaccgtcacgaagtctgaccgtgactagtttagcctctgagtcgagaagctcaaggtcttttactttaagcgcaatagtttcaacagtagtggataaaacaaccgagatgacaacaacaaaagtggttcacacctcgagattcagcaaaattacagagacaagcataacactcgcctcttcttctccagacatttcaacccttgcagttacgtcaacgacaaacaaaatggcaaccttatcgccttctatgtcagcgaaatccaccgtgataagtcgcattccgacgctctcgtttagtacagtttctttttcttcaagtacgcttccaagcagctctgctttgccttcatccaacacgactctgactgtaacagcgacagacacgacccaaacagtcatcgtgcttccaacatcatctgtactacccactccgccacctaacttccccccggtgcttcttaacaacatagggcgggtacgagcccccgcgggtaaggccctgcattacacaatacgcgacgatacgttttatgacagggaggaccaggccactacacgtaacttgactctatcgatctcgcttgcaaacggttccagcattccgacagacttctggctgcagtttgacaccgccagtcaaacgataaacggattaccgctgaacgggcatgtgcccagtgggattgtgggtgaagtgtttgtactgcatgctagagataagaacagcttagaagcgcgcgacgcgtttgaggtgtttgttgttccgtcagagaaaccagttgtacaggaattgagagtcagaataaggaacgagtttgtctcgtttagtcgcaacttaactcagagactcacgcttctaaagaagattgctaaatattacggcgacgcggacgaatcaaatatcagggtgttgagttttacttccggttctgttatcatgacctggacaaatgattcactacctacagacaggtgtgaccaggaaaaagtacagtacgttgcgaacaagatgcttctttcaaacggcgaagtaagagaggaatttaggatcgcattagaaggtttccccgttgaaagcgcaagcgaggaacgagttggagtttgtaacggatcgtttatcgtcccaaccgagcagccgattgaccctgctaaagcacaatccaagatggacgaacatttgtggtacaaacacgttcttgtgggtgtccttgttgttctcataatcatcatccttgccgtcttgctgatctggtgttatagacgacgaagacctaaaccttccagcgaaaaacgcacgtttaagaagcgaaaacccatcgtcctcgacccagagattgaactcaaaccaattcccggtaaaccgcttgttctgcccgacgatagcccaagtttcccgccttcgtacatctctgaaacttcactggacaaacccatgtattctgattctgacgaggacgaagaggattatgggaaaaggagcccttctgttaggtacgagcctcccccgcccttttaccaagctatggatgacgacgatccacggatcagtccaccgccagcctatctaatgcctccattgtattga

Transcript

evm.model.Ap5.852

GTCGTGACACTTTGTTTGTTGTAACACCACATGTTTCTTGTCCCAAGGTTTGACAACTGTCACGTCACGCACCACAAGTAAAGTCACGCTTAGAAGCACCTTAGTGAAAATGAACTCTTCCACTGCACCAAGCTTATCTTCTATTGGATCAAGAATGACCACTGTTAGGCTTTCGTCACCGCAAATAAAGAGCACTACAGTCACGCAGAGTAACGCTACAACGATCACGCGTTTAGTCACGTCAGAGAACCGCACTGTTGTAGTCACACCTAGTTTTGTAAAGTCATCGTTAAGCTCTGAAGTCACGCAAGTCAATTCTACGGCCAGTAGGAATTTGTCAGTGTCATTGATCAGCTCTGTTGTCAATCGGAACAGTTCAGAGTTTACTCAGAGTAGTATAACTCCTAGGACGTTAATCAGCCGTAGTGTCACGCCAACTAGTGTCACTGATTCATTAGTCGACGTCACGCCATCTTCAGTTGTTTCTCCAGTGACATCATCAAGAGCTGATTCCACGTCTGAAATGAGATCATCGCGAGTAAACGCCAGTATGACATCTACCGTGATATCAAGAGTGTCAGTAAGCGTGACGTCTCTGGTAAAGCCAAGCGTAACTTCTGATGTGACATCAAGCGTGATCAGGAGCCAGACTTTTAGCTTTCAAACAGAGTTGATTGACACGTCACGCCTCGCAAAACCATCCTCGGTCATTTCTTTAGTGTCGATCTCAATTCCAGTCTCGATTTCGCAAATGTCATCTCCGCTGAGATCGACAGCGAAATCAGTTTTCAGCGTGACACTATCCTCAGGTCAGCCGTCTTTTAAGACTGCGTTACCGTCACGAAGTCTGACCGTGACTAGTTTAGCCTCTGAGTCGAGAAGCTCAAGGTCTTTTACTTTAAGCGCAATAGTTTCAACAGTAGTGGATAAAACAACCGAGATGACAACAACAAAAGTGGTTCACACCTCGAGATTCAGCAAAATTACAGAGACAAGCATAACACTCGCCTCTTCTTCTCCAGACATTTCAACCCTTGCAGTTACGTCAACGACAAACAAAATGGCAACCTTATCGCCTTCTATGTCAGCGAAATCCACCGTGATAAGTCGCATTCCGACGCTCTCGTTTAGTACAGTTTCTTTTTCTTCAAGTACGCTTCCAAGCAGCTCTGCTTTGCCTTCATCCAACACGACTCTGACTGTAACAGCGACAGACACGACCCAAACAGTCATCGTGCTTCCAACATCATCTGTACTACCCACTCCGCCACCTAACTTCCCCCCGGTGCTTCTTAACAACATAGGGCGGGTACGAGCCCCCGCGGGTAAGGCCCTGCATTACACAATACGCGACGATACGTTTTATGACAGGGAGGACCAGGCCACTACACGTAACTTGACTCTATCGATCTCGCTTGCAAACGGTTCCAGCATTCCGACAGACTTCTGGCTGCAGTTTGACACCGCCAGTCAAACGATAAACGGATTACCGCTGAACGGGCATGTGCCCAGTGGGATTGTGGGTGAAGTGTTTGTACTGCATGCTAGAGATAAGAACAGCTTAGAAGCGCGCGACGCGTTTGAGGTGTTTGTTGTTCCGTCAGAGAAACCAGTTGTACAGGAATTGAGAGTCAGAATAAGGAACGAGTTTGTCTCGTTTAGTCGCAACTTAACTCAGAGACTCACGCTTCTAAAGAAGATTGCTAAATATTACGGCGACGCGGACGAATCAAATATCAGGGTGTTGAGTTTTACTTCCGGTTCTGTTATCATGACCTGGACAAATGATTCACTACCTACAGACAGGTGTGACCAGGAAAAAGTACAGTACGTTGCGAACAAGATGCTTCTTTCAAACGGCGAAGTAAGAGAGGAATTTAGGATCGCATTAGAAGGTTTCCCCGTTGAAAGCGCAAGCGAGGAACGAGTTGGAGTTTGTAACGGATCGTTTATCGTCCCAACCGAGCAGCCGATTGACCCTGCTAAAGCACAATCCAAGATGGACGAACATTTGTGGTACAAACACGTTCTTGTGGGTGTCCTTGTTGTTCTCATAATCATCATCCTTGCCGTCTTGCTGATCTGGTGTTATAGACGACGAAGACCTAAACCTTCCAGCGAAAAACGCACGTTTAAGAAGCGAAAACCCATCGTCCTCGACCCAGAGATTGAACTCAAACCAATTCCCGGTAAACCGCTTGTTCTGCCCGACGATAGCCCAAGTTTCCCGCCTTCGTACATCTCTGAAACTTCACTGGACAAACCCATGTATTCTGATTCTGACGAGGACGAAGAGGATTATGGGAAAAGGAGCCCTTCTGTTAGGTACGAGCCTCCCCCGCCCTTTTACCAAGCTATGGATGACGACGATCCACGGATCAGTCCACCGCCAGCCTATCTAATGCCTCCATTGTATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28685	Dystroglycan 1 OS=Oryctolagus cuniculus OX=9986 GN=DAG1 PE=1 SV=1
Q9TSZ6	Dystroglycan 1 OS=Canis lupus familiaris OX=9615 GN=DAG1 PE=3 SV=1
Q29243	Dystroglycan 1 OS=Sus scrofa OX=9823 GN=DAG1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003875 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05454 all species →	DAG1	Dystroglycan (Dystrophin-associated glycoprotein 1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR008465 all species →	Domain	Dystroglycan, C-terminal	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR030398 all species →	Domain	DG-type SEA domain	Interproscan
IPR006644 all species →	Domain	Dystroglycan-type cadherin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21559 all species →	DYSTROGLYCAN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016010 all species →	Cellular Component	dystrophin-associated glycoprotein complex	Interproscan
GO:0002009 all species →	Biological Process	morphogenesis of an epithelium	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0016011 all species →	Cellular Component	dystroglycan complex	Interproscan
GO:0016203 all species →	Biological Process	muscle attachment	Interproscan
GO:0021675 all species →	Biological Process	nerve development	Interproscan
GO:0042383 all species →	Cellular Component	sarcolemma	Interproscan
GO:0043236 all species →	Molecular Function	laminin binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.852.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.