Gene detail

Detailed information of evm.model.Ap5.928 in Astrangia poculata

Genomic Location: Ap5:9731336...9770463
NR annotation: CAH3125786.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.928

atgatttgcatacaaaacctaactcatgaactgtccaatgccgaccaaacagatggagcagcaaagtatggcacagtcgcacagtctcttgttagtccatttatcctcaagcacagggacaaagacgtcaaagcacatgctgcgtgttgtcttgccgacattctgagaatctttgctcctgatgcaccttacgatgaagaacaactgaaggcggtgtttaaaatgattgtgaaccagttgaagggtcttgaaaacaccaagtcaaacctgtcaaaaaagtacttttatcttttagagagtttagcattagttaaatcattcaatatttgtctggagctggacttccaagacattatactgcagttatttaaactgctcttccaagttgtgaatgaaaatcattccaacaagattcagaatttcatgttggatgtgatgtgtcccatcattatagaaggtgactctgtgccccaggaacttctcgacacagtgctcatcaacatcattgagccacaaaagagtgaggaccctgtggcttataaattagcgtgcgagtttattaagaggacttcatcagctttagagccttacttacaaatgtttttcaacagtactcttgctttggggaagacttcagacagcattctgactgacaacatttatgaccttatactggagttaaacagaatctgtccaagtacacttttatctgttgtgccacagctggagtttaaattaaagactgcaaaacagtcatatcttttgcgaacacgctcggacttagtacgacagggagagagcgtggaagtagaagagcgattagcagttaccaaattactaggtcagatgttttctgagcaagactctgaactggcaactcaaaataaacctctgtggaactcttacttaggaaggtttgtggatatcaatgtagatgtccgtgtagaatgcataaaaagagccaaggaatttctacagtatcaccctgatctggctgctgatttaactgataaactacatgagagacagcgcgacccagatgagagagtgcgacaagaagtggtagcgaccatctgtgatgcagcatcagaaaatatcagttgcatttctgatcagcttcttgatgatgtttgtgaaagaatgagagataagaagtggcatgtcagaagagaagcaatgatgtgtcttgggaaattgttcaagaaagtgacaacaggtacaacagccaacaaaacagcagctaagaaattatcatgggttccaagcaagcttcttcactgttattatcttaacacaccagaaaacaggctttgtgtggaaaggattttaattggttgcttggtgccagttagtttagaagctgatcagaagatgaaaagattattacatatttattgcaaacttgatgaggcagcaatgagtgccttccatggaattttgacatgccagcaaagagtgcggtcagacattgcagatcttattgagctatcaactggagaggaggcacaagataatgagacactggctttctcaaagatcatttcccttgcaagagcttttccagatgcttttaaatttcaagaaaacctcaagaaattacgtgacatgattcaggagcccacactgagagatttgctgaagacatgtatcaaccctgacataggatgttcaaaggttttcaaggcagtgagtgatgttgtattaaaggttggatccaagaaccctatcctggagacattaaaagctcttctggatcgtgctgctcctcttcttgtagatgaacagtgtattaaagagctttttaaactggttaaggatgctgttgaggggctctctgatgatgaggatgatgagtacgagtggcatgagagctctgggatgagtcctgttggaaagaaaggattggcactgctattgggtctggctggtgtgtttccttctcaatttcaaaatgatgacacatttcaacaactactggttttcctgaaaaataaggatcaagaaatagttgatctgtcacttaagatgcttgccttgactggggatggtattgaaaaagtgaacaaatcattagcaaattactatcacccagtcctgtccaaattagcattaaagggaactccttgtcaagccaagcactctctgagatccatagcaaagatttcagctgcttcctcacaaccttttgatcgtgtcttctcaaaccttgttagctccttgacctatgactgtcctcttctgctaacaactctgacagctcttggtgagattgcacttttggcaccagccctgtttgagactcaaagacctgctattgtgcgagattttgttgtcaaggaactgctgatgaaagataggggtgaggaagccgattctgatgagagtcaaagtgcatggtgtgaggacagagatgttacccaagaaacacaagcgaagatcaaaggtatacgtctcctagtcaagtggttgagaggccgggaagctaaccacaagccttcagctcagccggtgctcaaattgttagacagtgtgctcgctcataaaggggatctacaacagcagggatgtgtaagtgcccctgattgttcaagacttcgtcttgcagcagcctgtggaatcattaagattgctcaggaacctaactacattgagtgtattactcttgagaactttcagcggctctcactagtcatgcaggactcttgttacgaggttcgagacaagttcacaaagaagcttcacaaagctgaagatttactgaaacttcccttggaatatctcgggatatttgcactagcagcaccagagcctgtcaaagaaaggaagaaccaggttagacaaatgattacaaagaatgtcaagacaaggagagattacttaaagcaacactcagccgctcaagcttgttcgcactccattcttccagagtatgctctgccctgtgttatccacatgttggctcatcacccagacttcaaacaagacgatcacgagactcttgtacagttcagagattacctttggttcttcatggagccaattttggccaaagcagataattacagcttcctgaaaaaactggtagaaaacgtcaaagaaactaaagatgcccaatcacctgatgatgaagaagtaaacaagaatctttacactgtttgtgatctggcactaggactcatcataaacaaggttcattcattcgttttgaaagaattcccaggcaatcctgttttacctaaaaggttctttgttccttcagagggaggaagccccaacactaaaagttatctgccgaaaggattccagtttactgctgcaaagggacagaagaaaggaggagccgtggagtccaagtcaacgccttcaaagaagtcatcaacaacttctgccaaaagtgataagaaatcacaagggaaagcaccaagcaaaacttcaaaaacgcccaagaatactttcaaggaaaaagtaaaagagctccaggcagaaatggaggaatcttcgtcagagacgccagaaagtgggtttgctagtccagccgatgaacagccatctccaagggtcaataaagggttcattgtctataaaaatgacggcaagctagcgagaacaaagtttattgtcagcttggagccttcgtaa

Transcript

evm.model.Ap5.928

ATGATTTGCATACAAAACCTAACTCATGAACTGTCCAATGCCGACCAAACAGATGGAGCAGCAAAGTATGGCACAGTCGCACAGTCTCTTGTTAGTCCATTTATCCTCAAGCACAGGGACAAAGACGTCAAAGCACATGCTGCGTGTTGTCTTGCCGACATTCTGAGAATCTTTGCTCCTGATGCACCTTACGATGAAGAACAACTGAAGGCGGTGTTTAAAATGATTGTGAACCAGTTGAAGGGTCTTGAAAACACCAAGTCAAACCTGTCAAAAAAGTACTTTTATCTTTTAGAGAGTTTAGCATTAGTTAAATCATTCAATATTTGTCTGGAGCTGGACTTCCAAGACATTATACTGCAGTTATTTAAACTGCTCTTCCAAGTTGTGAATGAAAATCATTCCAACAAGATTCAGAATTTCATGTTGGATGTGATGTGTCCCATCATTATAGAAGGTGACTCTGTGCCCCAGGAACTTCTCGACACAGTGCTCATCAACATCATTGAGCCACAAAAGAGTGAGGACCCTGTGGCTTATAAATTAGCGTGCGAGTTTATTAAGAGGACTTCATCAGCTTTAGAGCCTTACTTACAAATGTTTTTCAACAGTACTCTTGCTTTGGGGAAGACTTCAGACAGCATTCTGACTGACAACATTTATGACCTTATACTGGAGTTAAACAGAATCTGTCCAAGTACACTTTTATCTGTTGTGCCACAGCTGGAGTTTAAATTAAAGACTGCAAAACAGTCATATCTTTTGCGAACACGCTCGGACTTAGTACGACAGGGAGAGAGCGTGGAAGTAGAAGAGCGATTAGCAGTTACCAAATTACTAGGTCAGATGTTTTCTGAGCAAGACTCTGAACTGGCAACTCAAAATAAACCTCTGTGGAACTCTTACTTAGGAAGGTTTGTGGATATCAATGTAGATGTCCGTGTAGAATGCATAAAAAGAGCCAAGGAATTTCTACAGTATCACCCTGATCTGGCTGCTGATTTAACTGATAAACTACATGAGAGACAGCGCGACCCAGATGAGAGAGTGCGACAAGAAGTGGTAGCGACCATCTGTGATGCAGCATCAGAAAATATCAGTTGCATTTCTGATCAGCTTCTTGATGATGTTTGTGAAAGAATGAGAGATAAGAAGTGGCATGTCAGAAGAGAAGCAATGATGTGTCTTGGGAAATTGTTCAAGAAAGTGACAACAGGTACAACAGCCAACAAAACAGCAGCTAAGAAATTATCATGGGTTCCAAGCAAGCTTCTTCACTGTTATTATCTTAACACACCAGAAAACAGGCTTTGTGTGGAAAGGATTTTAATTGGTTGCTTGGTGCCAGTTAGTTTAGAAGCTGATCAGAAGATGAAAAGATTATTACATATTTATTGCAAACTTGATGAGGCAGCAATGAGTGCCTTCCATGGAATTTTGACATGCCAGCAAAGAGTGCGGTCAGACATTGCAGATCTTATTGAGCTATCAACTGGAGAGGAGGCACAAGATAATGAGACACTGGCTTTCTCAAAGATCATTTCCCTTGCAAGAGCTTTTCCAGATGCTTTTAAATTTCAAGAAAACCTCAAGAAATTACGTGACATGATTCAGGAGCCCACACTGAGAGATTTGCTGAAGACATGTATCAACCCTGACATAGGATGTTCAAAGGTTTTCAAGGCAGTGAGTGATGTTGTATTAAAGGTTGGATCCAAGAACCCTATCCTGGAGACATTAAAAGCTCTTCTGGATCGTGCTGCTCCTCTTCTTGTAGATGAACAGTGTATTAAAGAGCTTTTTAAACTGGTTAAGGATGCTGTTGAGGGGCTCTCTGATGATGAGGATGATGAGTACGAGTGGCATGAGAGCTCTGGGATGAGTCCTGTTGGAAAGAAAGGATTGGCACTGCTATTGGGTCTGGCTGGTGTGTTTCCTTCTCAATTTCAAAATGATGACACATTTCAACAACTACTGGTTTTCCTGAAAAATAAGGATCAAGAAATAGTTGATCTGTCACTTAAGATGCTTGCCTTGACTGGGGATGGTATTGAAAAAGTGAACAAATCATTAGCAAATTACTATCACCCAGTCCTGTCCAAATTAGCATTAAAGGGAACTCCTTGTCAAGCCAAGCACTCTCTGAGATCCATAGCAAAGATTTCAGCTGCTTCCTCACAACCTTTTGATCGTGTCTTCTCAAACCTTGTTAGCTCCTTGACCTATGACTGTCCTCTTCTGCTAACAACTCTGACAGCTCTTGGTGAGATTGCACTTTTGGCACCAGCCCTGTTTGAGACTCAAAGACCTGCTATTGTGCGAGATTTTGTTGTCAAGGAACTGCTGATGAAAGATAGGGGTGAGGAAGCCGATTCTGATGAGAGTCAAAGTGCATGGTGTGAGGACAGAGATGTTACCCAAGAAACACAAGCGAAGATCAAAGGTATACGTCTCCTAGTCAAGTGGTTGAGAGGCCGGGAAGCTAACCACAAGCCTTCAGCTCAGCCGGTGCTCAAATTGTTAGACAGTGTGCTCGCTCATAAAGGGGATCTACAACAGCAGGGATGTGTAAGTGCCCCTGATTGTTCAAGACTTCGTCTTGCAGCAGCCTGTGGAATCATTAAGATTGCTCAGGAACCTAACTACATTGAGTGTATTACTCTTGAGAACTTTCAGCGGCTCTCACTAGTCATGCAGGACTCTTGTTACGAGGTTCGAGACAAGTTCACAAAGAAGCTTCACAAAGCTGAAGATTTACTGAAACTTCCCTTGGAATATCTCGGGATATTTGCACTAGCAGCACCAGAGCCTGTCAAAGAAAGGAAGAACCAGGTTAGACAAATGATTACAAAGAATGTCAAGACAAGGAGAGATTACTTAAAGCAACACTCAGCCGCTCAAGCTTGTTCGCACTCCATTCTTCCAGAGTATGCTCTGCCCTGTGTTATCCACATGTTGGCTCATCACCCAGACTTCAAACAAGACGATCACGAGACTCTTGTACAGTTCAGAGATTACCTTTGGTTCTTCATGGAGCCAATTTTGGCCAAAGCAGATAATTACAGCTTCCTGAAAAAACTGGTAGAAAACGTCAAAGAAACTAAAGATGCCCAATCACCTGATGATGAAGAAGTAAACAAGAATCTTTACACTGTTTGTGATCTGGCACTAGGACTCATCATAAACAAGGTTCATTCATTCGTTTTGAAAGAATTCCCAGGCAATCCTGTTTTACCTAAAAGGTTCTTTGTTCCTTCAGAGGGAGGAAGCCCCAACACTAAAAGTTATCTGCCGAAAGGATTCCAGTTTACTGCTGCAAAGGGACAGAAGAAAGGAGGAGCCGTGGAGTCCAAGTCAACGCCTTCAAAGAAGTCATCAACAACTTCTGCCAAAAGTGATAAGAAATCACAAGGGAAAGCACCAAGCAAAACTTCAAAAACGCCCAAGAATACTTTCAAGGAAAAAGTAAAAGAGCTCCAGGCAGAAATGGAGGAATCTTCGTCAGAGACGCCAGAAAGTGGGTTTGCTAGTCCAGCCGATGAACAGCCATCTCCAAGGGTCAATAAAGGGTTCATTGTCTATAAAAATGACGGCAAGCTAGCGAGAACAAAGTTTATTGTCAGCTTGGAGCCTTCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F3U9	Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus OX=9031 GN=PDS5B PE=2 SV=3
Q4VA53	Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus OX=10090 GN=Pds5b PE=1 SV=1
Q9NTI5	Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens OX=9606 GN=PDS5B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003756 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20168 all species →	PDS5	Sister chromatid cohesion protein PDS5 protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR039776 all species →	Family	Sister chromatid cohesion protein Pds5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12663 all species →	ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0007064 all species →	Biological Process	mitotic sister chromatid cohesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11267	PDS5; sister chromatid cohesion protein PDS5	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.