Gene detail

Detailed information of evm.model.Ap6.1001 in Astrangia poculata

Genomic Location: Ap6:9559191...9574130
NR annotation: CAH3107660.1, unnamed protein product, partial [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1001

atgattttgccagggatctttttgtcgtggttgattgtatttgtctctagtgaaactgaaattcttatcaatgagccacctgacgagggattgtggttctggaacatcacaacaatctcacaaggagcagggtggatccatccttcaactgtgaaaaagaggtacaaagtttgtgatattagtgatgcaatcacaagggaacctaagaactggttacaaacacactttattgatgtcagaaatgctaagcggctggatattgcagtgaattacaaccttcttaactgtcccaagattgctactagtaaatactgcaaaacattctttactctttattcttatcatactgataccaaagatcctgttcctgatccaaaaaaaggggggtttcaaaaagaaaccgtcataacgccagaaacgttgctttctcccggaagttcagtaaatgaggtatttcgtggttcagtggtaactaaagccaaaggcatatatctggcatttttagaccaaggagtctgtgtgacaataactaaagtcgtcattagctataaatactgcccaaagccaggcagtactttagtgacatttccaagaacagttgccccagcaaatgactcagatctaatagaacaaataggaacatgtaccgatgtaaactcaattaacaaagtcaagttatcaagcgtgtgtctcagtaatggagaatggaacaaaacagatgacgtgatgtgtctttgtaaagctggttacgaactcgtcaatgggtctgtggctccactggaatgcaaagaatgccgaagtggtgcatacaagagtacagttagcaataccaaatgtcttcaatgccccacgaactcagcttctaatgcagagagtacagcttgttcttgtgataaaggattttacaaaacatcagattgggtagactgcaaagctctaccacaagctccactcgaggcaacgacaaccgttgtcggggcgacacacgttgtcatcatttggcaccgctcgccagacgataacgggacgcttacatatgctgtggactgctttaggtgcaagtcaaacgaagataaacaatgtgacgagccgtgtgaccgacaagtacgatattcaccaagaaaagagaacaacactggcgtcaacgtaacactgaacggtttatcagcatccagcttctttttgtttagagtttactctgtgagtgagttaaatcaacaagagaaagacaggaataactggaagtttgctgaagtgtatgtggaaacaaaagcttcaactacttcaatcccgacaactggaggccttctttttgtaattgaaatagatgggcccatcgaaaaaaagcaagggaaaagaaagtgccaacagccagtggatccgagatcagggtctacgaagcagaacaagctttgtggaaacaacacgaaagatattccaatgcttcccgaagctgaagaccaaaataatgatgataacattctggactcttttgaacttgaccgtgaccagataacagtggtaagattactcgggaccggtaactttggcaaagtgtccaaagcaaactacggaagattggttgtagccgtcaagtccctaaaagaaaatgcccagccgaaggacatacaagacatgctcagtgaattagatgtcatgaaacctttgcaccctcatcctcatgtcgttagacttattggttgttgtactgaaaaagatccgttgttgattgttttggagtatttaccatatggtgatttgttgggatatctgcgcaagagcagaggaatcgaggacacttacaacacaggagaaaaaagaccaaactccagactcagtgaaaaggatctgttatcttttgcttggatgattgctgatggtatgaactatctggcagcaatgaaggttgttcatcgtgacttagcagctcgcaatgttttagtaggtgagaacaaagtttgtaaaatttcagactttggattggcacgtgaattggagggagatgtttacacaagaagaactcaggctcgtcttccagctaagtggatgcccccggaatctcttttctatggcgaatctagttctatgagtgacatatggtcctacggtattgtcatgtgggaggtgtttactatcggtgagtcaccttatcctggatttaaacatcgagaagtcgctggcctgctccagacagggtaccgcatgcctagaccaagacacatctctgaagaactatattccattatgtctgagtgctgggaagagcagccccacaagaggccaacatttcagtggctatgctctgcagtcagaagacttctagatgacaaacagatgtatgttaacttgggagagtatgatgatcaggattacgttaacttcgatatgataaatgatcaggagtga

Transcript

evm.model.Ap6.1001

ATGATTTTGCCAGGGATCTTTTTGTCGTGGTTGATTGTATTTGTCTCTAGTGAAACTGAAATTCTTATCAATGAGCCACCTGACGAGGGATTGTGGTTCTGGAACATCACAACAATCTCACAAGGAGCAGGGTGGATCCATCCTTCAACTGTGAAAAAGAGGTACAAAGTTTGTGATATTAGTGATGCAATCACAAGGGAACCTAAGAACTGGTTACAAACACACTTTATTGATGTCAGAAATGCTAAGCGGCTGGATATTGCAGTGAATTACAACCTTCTTAACTGTCCCAAGATTGCTACTAGTAAATACTGCAAAACATTCTTTACTCTTTATTCTTATCATACTGATACCAAAGATCCTGTTCCTGATCCAAAAAAAGGGGGGTTTCAAAAAGAAACCGTCATAACGCCAGAAACGTTGCTTTCTCCCGGAAGTTCAGTAAATGAGGTATTTCGTGGTTCAGTGGTAACTAAAGCCAAAGGCATATATCTGGCATTTTTAGACCAAGGAGTCTGTGTGACAATAACTAAAGTCGTCATTAGCTATAAATACTGCCCAAAGCCAGGCAGTACTTTAGTGACATTTCCAAGAACAGTTGCCCCAGCAAATGACTCAGATCTAATAGAACAAATAGGAACATGTACCGATGTAAACTCAATTAACAAAGTCAAGTTATCAAGCGTGTGTCTCAGTAATGGAGAATGGAACAAAACAGATGACGTGATGTGTCTTTGTAAAGCTGGTTACGAACTCGTCAATGGGTCTGTGGCTCCACTGGAATGCAAAGAATGCCGAAGTGGTGCATACAAGAGTACAGTTAGCAATACCAAATGTCTTCAATGCCCCACGAACTCAGCTTCTAATGCAGAGAGTACAGCTTGTTCTTGTGATAAAGGATTTTACAAAACATCAGATTGGGTAGACTGCAAAGCTCTACCACAAGCTCCACTCGAGGCAACGACAACCGTTGTCGGGGCGACACACGTTGTCATCATTTGGCACCGCTCGCCAGACGATAACGGGACGCTTACATATGCTGTGGACTGCTTTAGGTGCAAGTCAAACGAAGATAAACAATGTGACGAGCCGTGTGACCGACAAGTACGATATTCACCAAGAAAAGAGAACAACACTGGCGTCAACGTAACACTGAACGGTTTATCAGCATCCAGCTTCTTTTTGTTTAGAGTTTACTCTGTGAGTGAGTTAAATCAACAAGAGAAAGACAGGAATAACTGGAAGTTTGCTGAAGTGTATGTGGAAACAAAAGCTTCAACTACTTCAATCCCGACAACTGGAGGCCTTCTTTTTGTAATTGAAATAGATGGGCCCATCGAAAAAAAGCAAGGGAAAAGAAAGTGCCAACAGCCAGTGGATCCGAGATCAGGGTCTACGAAGCAGAACAAGCTTTGTGGAAACAACACGAAAGATATTCCAATGCTTCCCGAAGCTGAAGACCAAAATAATGATGATAACATTCTGGACTCTTTTGAACTTGACCGTGACCAGATAACAGTGGTAAGATTACTCGGGACCGGTAACTTTGGCAAAGTGTCCAAAGCAAACTACGGAAGATTGGTTGTAGCCGTCAAGTCCCTAAAAGAAAATGCCCAGCCGAAGGACATACAAGACATGCTCAGTGAATTAGATGTCATGAAACCTTTGCACCCTCATCCTCATGTCGTTAGACTTATTGGTTGTTGTACTGAAAAAGATCCGTTGTTGATTGTTTTGGAGTATTTACCATATGGTGATTTGTTGGGATATCTGCGCAAGAGCAGAGGAATCGAGGACACTTACAACACAGGAGAAAAAAGACCAAACTCCAGACTCAGTGAAAAGGATCTGTTATCTTTTGCTTGGATGATTGCTGATGGTATGAACTATCTGGCAGCAATGAAGGTTGTTCATCGTGACTTAGCAGCTCGCAATGTTTTAGTAGGTGAGAACAAAGTTTGTAAAATTTCAGACTTTGGATTGGCACGTGAATTGGAGGGAGATGTTTACACAAGAAGAACTCAGGCTCGTCTTCCAGCTAAGTGGATGCCCCCGGAATCTCTTTTCTATGGCGAATCTAGTTCTATGAGTGACATATGGTCCTACGGTATTGTCATGTGGGAGGTGTTTACTATCGGTGAGTCACCTTATCCTGGATTTAAACATCGAGAAGTCGCTGGCCTGCTCCAGACAGGGTACCGCATGCCTAGACCAAGACACATCTCTGAAGAACTATATTCCATTATGTCTGAGTGCTGGGAAGAGCAGCCCCACAAGAGGCCAACATTTCAGTGGCTATGCTCTGCAGTCAGAAGACTTCTAGATGACAAACAGATGTATGTTAACTTGGGAGAGTATGATGATCAGGATTACGTTAACTTCGATATGATAAATGATCAGGAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07949	Proto-oncogene tyrosine-protein kinase receptor Ret OS=Homo sapiens OX=9606 GN=RET PE=1 SV=3
P35546	Proto-oncogene tyrosine-protein kinase receptor Ret OS=Mus musculus OX=10090 GN=Ret PE=1 SV=2
G3V9H8	Proto-oncogene tyrosine-protein kinase receptor Ret OS=Rattus norvegicus OX=10116 GN=Ret PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000023 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01404 all species →	Ephrin_lbd	Ephrin receptor ligand binding domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001090 all species →	Domain	Ephrin receptor ligand binding domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.1001.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.