Genomic Location: Ap6:9669881...9673441
NR annotation: XP_044166186.1, uncharacterized protein LOC122950159 [Acropora millepora]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.1011 |
| Transcript |
| evm.model.Ap6.1011 |
| Protein |
| evm.model.Ap6.1011 |
| UniProt accession | Description |
|---|---|
| Q9QXV1 | Chromobox protein homolog 8 OS=Mus musculus OX=10090 GN=Cbx8 PE=1 SV=1 |
| Q9HC52 | Chromobox protein homolog 8 OS=Homo sapiens OX=9606 GN=CBX8 PE=1 SV=3 |
| O95503 | Chromobox protein homolog 6 OS=Homo sapiens OX=9606 GN=CBX6 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004495 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00385 all species → | Chromo | Chromo (CHRromatin Organisation MOdifier) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036157 all species → | Homologous_superfamily | dUTPase-like superfamily | Interproscan |
| IPR023780 all species → | Domain | Chromo domain | Interproscan |
| IPR000953 all species → | Domain | Chromo/chromo shadow domain | Interproscan |
| IPR052458 all species → | Family | Polycomb group PRC1-like complex component | Interproscan |
| IPR016197 all species → | Homologous_superfamily | Chromo-like domain superfamily | Interproscan |
| IPR023779 all species → | Conserved_site | Chromo domain, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46389 all species → | POLYCOMB GROUP PROTEIN PC | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000122 all species → | Biological Process | negative regulation of transcription by RNA polymerase II | Interproscan |
| GO:0000785 all species → | Cellular Component | chromatin | Interproscan |
| GO:0003682 all species → | Molecular Function | chromatin binding | Interproscan |
| GO:0035064 all species → | Molecular Function | methylated histone binding | Interproscan |
| GO:0035102 all species → | Cellular Component | PRC1 complex | Interproscan |
evm.model.Ap6.1011.Transcript abundance of evm.model.Ap6.1011 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 1 | 171.20 | 2,054.35 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR10674714 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674715 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674724 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674733 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674734 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674735 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674736 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674737 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674739 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674743 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674746 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674747 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674748 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674750 | whole organism · cold control | whole organism | not recorded | cold control | SRP237293 | 0.00 |
| SRR10674706 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 2,054.35 |
| SRR10674707 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 0.00 |
| SRR10674708 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 0.00 |
| SRR10674717 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 0.00 |
| SRR10674718 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 0.00 |
| SRR10674720 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 0.00 |
| SRR10674721 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 0.00 |
| SRR10674725 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 0.00 |
| SRR10674731 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 0.00 |
| SRR10674741 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 0.00 |
| SRR10674752 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 0.00 |
| SRR10674753 | whole organism · heat control | whole organism | not recorded | heat control | SRP237293 | 0.00 |
| SRR10674711 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674712 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674713 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674722 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674723 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674730 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674732 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674738 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674740 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674744 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674745 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674749 | whole organism · cold challenge | whole organism | not recorded | cold challenge | SRP237293 | 0.00 |
| SRR10674709 | whole organism · heat challenge | whole organism | not recorded | heat challenge | SRP237293 | 0.00 |
| SRR10674710 | whole organism · heat challenge | whole organism | not recorded | heat challenge | SRP237293 | 0.00 |
| SRR10674716 | whole organism · heat challenge | whole organism | not recorded | heat challenge | SRP237293 | 0.00 |
| SRR10674719 | whole organism · heat challenge | whole organism | not recorded | heat challenge | SRP237293 | 0.00 |
| SRR10674726 | whole organism · heat challenge | whole organism | not recorded | heat challenge | SRP237293 | 0.00 |
| SRR10674727 | whole organism · heat challenge | whole organism | not recorded | heat challenge | SRP237293 | 0.00 |
| SRR10674728 | whole organism · heat challenge | whole organism | not recorded | heat challenge | SRP237293 | 0.00 |
| SRR10674729 | whole organism · heat challenge | whole organism | not recorded | heat challenge | SRP237293 | 0.00 |
| SRR10674742 | whole organism · heat challenge | whole organism | not recorded | heat challenge | SRP237293 | 0.00 |
| SRR10674751 | whole organism · heat challenge | whole organism | not recorded | heat challenge | SRP237293 | 0.00 |
| SRR10674754 | whole organism · heat challenge | whole organism | not recorded | heat challenge | SRP237293 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Astrangia poculata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 166 | evm.model.Ap4.7287 | 1 |
| Negatively correlated | 3 | evm.model.Ap4.2477 | -0.182637089920137 |
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Astrangia poculata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
