Genomic Location: Ap6:9967401...9972626
NR annotation: RMX54204.1, hypothetical protein pdam_00013649 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap6.1048 |
| Transcript |
| evm.model.Ap6.1048 |
| Protein |
| evm.model.Ap6.1048 |
| UniProt accession | Description |
|---|---|
| P02707 | Hepatic lectin OS=Gallus gallus OX=9031 PE=1 SV=1 |
| Q91ZW8 | CD209 antigen-like protein D OS=Mus musculus OX=10090 GN=Cd209d PE=2 SV=1 |
| Q8HXZ7 | CD209 antigen OS=Pan troglodytes OX=9598 GN=CD209 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000204 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00024 all species → | PAN_1 | PAN domain | Domain | Interproscan |
| PF00059 all species → | Lectin_C | Lectin C-type domain | Domain | Interproscan |
| PF17919 all species → | RT_RNaseH_2 | RNase H-like domain found in reverse transcriptase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050801 all species → | Family | Calcium-Dependent Lectins in Immunity and Development | Interproscan |
| IPR001304 all species → | Domain | C-type lectin-like | Interproscan |
| IPR003609 all species → | Domain | PAN/Apple domain | Interproscan |
| IPR016186 all species → | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR041577 all species → | Domain | Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22801 all species → | LITHOSTATHINE | Interproscan |
evm.model.Ap6.1048. This gene does have a gene model — the search simply returned no hit.evm.model.Ap6.1048.Transcript abundance of evm.model.Ap6.1048 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
