Gene detail

Detailed information of evm.model.Ap6.1128 in Astrangia poculata

Genomic Location: Ap6:10882321...10893690
NR annotation: CAH3168553.1, unnamed protein product [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1128

atgtttatggacggtgtctttgtttcagttttgtttgttatgtttcacggagttgcaggtgttgtactgtctggaaaggaaaccatcatcatccttccataccaagaacatttctgtcattcactgtccttcgaaacgccattcgccgatagagaaaacgtgagagtccagctctcctatcatcaggtagcaccgacctacgaagctgtggtgggctgggtcgagggtgttaacgcttccggttttgaagcgtgtgtagcaacttctggtcctatacacccaaggagggaagtggcagtgcagtggttcgcttatgatgatgtaccaagtcaagggaaagaaggagttatggatattccgctttggacgactggaacagaatgtgtgacagttgatttgtctgatgagggatttcaaaaacgcccatatgtatacgtgactccactgcacacactggtggacagaggatatgatgctgccattatctgggttgaaagcatctccagcttaggatttgaaatctgtctgagggagctcaagaattttgacggcgtccactcaagcattcgagtagcgtggcttgccttggaggacatacccagtgcttggattaaacaaatcccactaaagaacattgttactttgcccaacactcaaccgcttactaacgatcgacattacagcttctgccagagcttcaacttcagcaagccgttctttgcgccacccaccttgattacgagtgccagtcacagaacagatcctaaaaaccctgacacagtccacccgaaacataatggcataactgagtggatagagaaaataaatacgagtggtttcatggtttgcatgaaggacttacagccttataacgagcatcatgacccagtaaatgtcagttaccttgctataggagctcttcatccatgcatttcagtcacgtgtcaatattatggccagtgccaggcctccagtccatccgaggctcactgtgcttgtaacacaaactgcccaaccttcgaagatcaaatctgtggtagtaatggaaaaacgtaccagaatcactgcttctataagctagacgtctgccagacgcgaacaaagatcactgtcttacacaatggctcctgctatgtttttatcatgcaccgcggtcgtgttgcccttcgcctggacacatcagacgtgcagtgtaggtcagcggtattcaaaaacaacactttcaacgacttcaggcgagttcacgtgcaaacaacaatcaactacttcaacgaaaccggaagttttgttcacgatgctgcagtcacttgggcggagaagatatccgtgggtggatttagtgcatgcgttttgaaggcaggccgcttagatcgaaaaacgccagacaaggggctaacgtttattgactacatcgcgtatcaaggagctcccgagggagctgtgtctggtgaagagagcttggtgtcatggtgggatgggacccactgcagacgtgtggatattcctgaggagaaattcacagagcccccttccatcattgtgacagccgagcacatgaatacagatcttaaacatgacgcggccacagtctgggtggaagatgtttctacaagctctttcagaatctgccttcgggaactgcaggacttcgatggattgcacgaaaatattagagtgaactggattgcctacaggtctcttccaagcagtatgcaagctgaacaacatgttatacacttcgagaacaacacactgcccacggatgaaaacaacaacgctttttgcaaggtgatttcgtttaatcgcacgtatgatcatgtgcctaccgtgctgattacagctagtcacagtatgcgagagggaaggactattcctgaatacaacagcattgcagcctgggtcgagtacatcacaacgaaggcctatcgagtgtgcatgaaggagcttaacacaccacacggctatgatccggtaactgtgacgtcactcatcatcggaaagtga

Transcript

evm.model.Ap6.1128

ATGTTTATGGACGGTGTCTTTGTTTCAGTTTTGTTTGTTATGTTTCACGGAGTTGCAGGTGTTGTACTGTCTGGAAAGGAAACCATCATCATCCTTCCATACCAAGAACATTTCTGTCATTCACTGTCCTTCGAAACGCCATTCGCCGATAGAGAAAACGTGAGAGTCCAGCTCTCCTATCATCAGGTAGCACCGACCTACGAAGCTGTGGTGGGCTGGGTCGAGGGTGTTAACGCTTCCGGTTTTGAAGCGTGTGTAGCAACTTCTGGTCCTATACACCCAAGGAGGGAAGTGGCAGTGCAGTGGTTCGCTTATGATGATGTACCAAGTCAAGGGAAAGAAGGAGTTATGGATATTCCGCTTTGGACGACTGGAACAGAATGTGTGACAGTTGATTTGTCTGATGAGGGATTTCAAAAACGCCCATATGTATACGTGACTCCACTGCACACACTGGTGGACAGAGGATATGATGCTGCCATTATCTGGGTTGAAAGCATCTCCAGCTTAGGATTTGAAATCTGTCTGAGGGAGCTCAAGAATTTTGACGGCGTCCACTCAAGCATTCGAGTAGCGTGGCTTGCCTTGGAGGACATACCCAGTGCTTGGATTAAACAAATCCCACTAAAGAACATTGTTACTTTGCCCAACACTCAACCGCTTACTAACGATCGACATTACAGCTTCTGCCAGAGCTTCAACTTCAGCAAGCCGTTCTTTGCGCCACCCACCTTGATTACGAGTGCCAGTCACAGAACAGATCCTAAAAACCCTGACACAGTCCACCCGAAACATAATGGCATAACTGAGTGGATAGAGAAAATAAATACGAGTGGTTTCATGGTTTGCATGAAGGACTTACAGCCTTATAACGAGCATCATGACCCAGTAAATGTCAGTTACCTTGCTATAGGAGCTCTTCATCCATGCATTTCAGTCACGTGTCAATATTATGGCCAGTGCCAGGCCTCCAGTCCATCCGAGGCTCACTGTGCTTGTAACACAAACTGCCCAACCTTCGAAGATCAAATCTGTGGTAGTAATGGAAAAACGTACCAGAATCACTGCTTCTATAAGCTAGACGTCTGCCAGACGCGAACAAAGATCACTGTCTTACACAATGGCTCCTGCTATGTTTTTATCATGCACCGCGGTCGTGTTGCCCTTCGCCTGGACACATCAGACGTGCAGTGTAGGTCAGCGGTATTCAAAAACAACACTTTCAACGACTTCAGGCGAGTTCACGTGCAAACAACAATCAACTACTTCAACGAAACCGGAAGTTTTGTTCACGATGCTGCAGTCACTTGGGCGGAGAAGATATCCGTGGGTGGATTTAGTGCATGCGTTTTGAAGGCAGGCCGCTTAGATCGAAAAACGCCAGACAAGGGGCTAACGTTTATTGACTACATCGCGTATCAAGGAGCTCCCGAGGGAGCTGTGTCTGGTGAAGAGAGCTTGGTGTCATGGTGGGATGGGACCCACTGCAGACGTGTGGATATTCCTGAGGAGAAATTCACAGAGCCCCCTTCCATCATTGTGACAGCCGAGCACATGAATACAGATCTTAAACATGACGCGGCCACAGTCTGGGTGGAAGATGTTTCTACAAGCTCTTTCAGAATCTGCCTTCGGGAACTGCAGGACTTCGATGGATTGCACGAAAATATTAGAGTGAACTGGATTGCCTACAGGTCTCTTCCAAGCAGTATGCAAGCTGAACAACATGTTATACACTTCGAGAACAACACACTGCCCACGGATGAAAACAACAACGCTTTTTGCAAGGTGATTTCGTTTAATCGCACGTATGATCATGTGCCTACCGTGCTGATTACAGCTAGTCACAGTATGCGAGAGGGAAGGACTATTCCTGAATACAACAGCATTGCAGCCTGGGTCGAGTACATCACAACGAAGGCCTATCGAGTGTGCATGAAGGAGCTTAACACACCACACGGCTATGATCCGGTAACTGTGACGTCACTCATCATCGGAAAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62356	Follistatin-related protein 1 OS=Mus musculus OX=10090 GN=Fstl1 PE=1 SV=2
Q5R9Y1	Follistatin-related protein 1 OS=Pongo abelii OX=9601 GN=FSTL1 PE=2 SV=2
Q62632	Follistatin-related protein 1 OS=Rattus norvegicus OX=10116 GN=Fstl1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09458 all species →	H_lectin	H-type lectin domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR050653 all species →	Family	Protease Inhibitors and Growth Factor Antagonists	Interproscan
IPR019019 all species →	Domain	H-type lectin domain	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10913 all species →	FOLLISTATIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.1128.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.