Gene detail

Detailed information of evm.model.Ap6.1134 in Astrangia poculata

Genomic Location: Ap6:10960558...10966962
NR annotation: XP_020601088.1, uncharacterized protein LOC110040225 isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1134

atgatagctggcgcactgccactaataacggctattccaaaggtcatcgtgcgtttggcagggcaaagaatcgacttcatccaccctggcgacgcgcacgtcttgcttagcgtcctgtacaccgcgtccgccatcgtttttcgtatcatgcaagcagagctcacgagtcttccattgttcattctgctgagctttgcacatggcgccgtggacttactagagaggttaaccatcgttatgcgagattatttgtggtacttgatttacaagaagcttaaacgcgacaggggcgccgaatcaatgttgagcgctgggaaatttcgcaccccaagaagcatgcgcttaattgccgacatgagcattcagatgattctcggagaatcgactgccttgatagcaacgactggctttattgagctgtacaacttcatgtaccctaccaaaacgctactatctaaaaacaacatttattttataaatcatttctttattcgcgtttttatcgctctaagcatcgattttattttcaattcattctcgttcttgcttattttcattcattctcgttctggcttaaactgtatgtatgtatttaaacatcgctgttgtgcgtgtttggaagaaaaaatggcggaagcacatggttgttgcttgtatcgtgaccactgtgaccataagtttctttgcctcttacctgttcgctgttgtaagagacaaaaattcaggaaagctagtcttgcccaaggcttcattgaaatccttcaaccgaagaagactagtttatgggtggcaaacggcaaggcccggcgagttacgtttgcttatgaaaagggagatgttgacaactggcttttggaaatattagatagccgaggcggtacagctcacgcatatccaaatgacataatatttccgctaaatcgaggaggaaagttgatttatgaaaagcatgtagttgtacccgagagtttaaagagtggcgaatataaattgaaaatgtgtggaaagctaaaagacaacaagaaagtttgccaagaaactgctgcatttcatattgaaggcgagcaaatggagagcaagacaatttactctcaaagtgcttctcgcaagccaggaaacgatgatggtcttcaaccacacgaaaaacgatttaaagaaagacaccacaactttgaagattttatgaggaaactggacgtggaagatatctggcccatacacggaacacattgcaccataccaaagatacataaacccacaaaagaagagttcactgaaaaatgcatgaaaccaggtcaggcttgtatcataactggcatgatggacgactggaaagcgatggaaaaatggccgtttgagaagtttcaacacgatcctcgcttagaggaaggcgtttatattggtcagaggatgatgtcagtgtctttaaccagctacgtgaaatatctgaaggaaagatctgcgaacgagagctcaccctgggtcatcttcatgccggatgtctttgatctctatcctgagctgcagaggtcgagtataataattagtgcttatgcaaggcagggggggataagaggtaagagggactacatcataccagatttcttttctgaagcagatgactttttgaccaatgtggaagatgagcttcgtcttgactggcgatggattatcatggccgccaaacggagtggctcgggatggcacgtggaccctgctaataccacaggctggctggctctggtacagggggctaaactgtgggggatgtaccctccttcagtgtatcatattccaggtgtgaagaacaattactaccagaagagagattacgacatggaagatgctttctactggtggatctatactcgaccatatttgaaaagcaaccttcccttggagtgcgtgcagaagccaggtgacattgtgttcattcctagcggctggtggcacagcgttcttaaccttgaccacactgtcagcgtcacgcagaacttttgtaacaaatacagtttaaaaacgtgcctgacggagcttaaggagcagactgacagtgatggaaacttcattggcaaaacatttgaacaactcgtgcaactgtacgccgagaaatacccgcaattttttgacaaagacgatcttgaatttgaggcaccaatgaaaggacaaggattaaccgatgcagaagaaaaggcgagaagattgcaagtgttaaaagactttcttgctgggaaaagtcaaaccatcgattaa

Transcript

evm.model.Ap6.1134

ATGATAGCTGGCGCACTGCCACTAATAACGGCTATTCCAAAGGTCATCGTGCGTTTGGCAGGGCAAAGAATCGACTTCATCCACCCTGGCGACGCGCACGTCTTGCTTAGCGTCCTGTACACCGCGTCCGCCATCGTTTTTCGTATCATGCAAGCAGAGCTCACGAGTCTTCCATTGTTCATTCTGCTGAGCTTTGCACATGGCGCCGTGGACTTACTAGAGAGGTTAACCATCGTTATGCGAGATTATTTGTGGTACTTGATTTACAAGAAGCTTAAACGCGACAGGGGCGCCGAATCAATGTTGAGCGCTGGGAAATTTCGCACCCCAAGAAGCATGCGCTTAATTGCCGACATGAGCATTCAGATGATTCTCGGAGAATCGACTGCCTTGATAGCAACGACTGGCTTTATTGAGCTGTACAACTTCATGTACCCTACCAAAACGCTACTATCTAAAAACAACATTTATTTTATAAATCATTTCTTTATTCGCGTTTTTATCGCTCTAAGCATCGATTTTATTTTCAATTCATTCTCGTTCTTGCTTATTTTCATTCATTCTCGTTCTGGCTTAAACTGTATGTATGTATTTAAACATCGCTGTTGTGCGTGTTTGGAAGAAAAAATGGCGGAAGCACATGGTTGTTGCTTGTATCGTGACCACTGTGACCATAAGTTTCTTTGCCTCTTACCTGTTCGCTGTTGTAAGAGACAAAAATTCAGGAAAGCTAGTCTTGCCCAAGGCTTCATTGAAATCCTTCAACCGAAGAAGACTAGTTTATGGGTGGCAAACGGCAAGGCCCGGCGAGTTACGTTTGCTTATGAAAAGGGAGATGTTGACAACTGGCTTTTGGAAATATTAGATAGCCGAGGCGGTACAGCTCACGCATATCCAAATGACATAATATTTCCGCTAAATCGAGGAGGAAAGTTGATTTATGAAAAGCATGTAGTTGTACCCGAGAGTTTAAAGAGTGGCGAATATAAATTGAAAATGTGTGGAAAGCTAAAAGACAACAAGAAAGTTTGCCAAGAAACTGCTGCATTTCATATTGAAGGCGAGCAAATGGAGAGCAAGACAATTTACTCTCAAAGTGCTTCTCGCAAGCCAGGAAACGATGATGGTCTTCAACCACACGAAAAACGATTTAAAGAAAGACACCACAACTTTGAAGATTTTATGAGGAAACTGGACGTGGAAGATATCTGGCCCATACACGGAACACATTGCACCATACCAAAGATACATAAACCCACAAAAGAAGAGTTCACTGAAAAATGCATGAAACCAGGTCAGGCTTGTATCATAACTGGCATGATGGACGACTGGAAAGCGATGGAAAAATGGCCGTTTGAGAAGTTTCAACACGATCCTCGCTTAGAGGAAGGCGTTTATATTGGTCAGAGGATGATGTCAGTGTCTTTAACCAGCTACGTGAAATATCTGAAGGAAAGATCTGCGAACGAGAGCTCACCCTGGGTCATCTTCATGCCGGATGTCTTTGATCTCTATCCTGAGCTGCAGAGGTCGAGTATAATAATTAGTGCTTATGCAAGGCAGGGGGGGATAAGAGGTAAGAGGGACTACATCATACCAGATTTCTTTTCTGAAGCAGATGACTTTTTGACCAATGTGGAAGATGAGCTTCGTCTTGACTGGCGATGGATTATCATGGCCGCCAAACGGAGTGGCTCGGGATGGCACGTGGACCCTGCTAATACCACAGGCTGGCTGGCTCTGGTACAGGGGGCTAAACTGTGGGGGATGTACCCTCCTTCAGTGTATCATATTCCAGGTGTGAAGAACAATTACTACCAGAAGAGAGATTACGACATGGAAGATGCTTTCTACTGGTGGATCTATACTCGACCATATTTGAAAAGCAACCTTCCCTTGGAGTGCGTGCAGAAGCCAGGTGACATTGTGTTCATTCCTAGCGGCTGGTGGCACAGCGTTCTTAACCTTGACCACACTGTCAGCGTCACGCAGAACTTTTGTAACAAATACAGTTTAAAAACGTGCCTGACGGAGCTTAAGGAGCAGACTGACAGTGATGGAAACTTCATTGGCAAAACATTTGAACAACTCGTGCAACTGTACGCCGAGAAATACCCGCAATTTTTTGACAAAGACGATCTTGAATTTGAGGCACCAATGAAAGGACAAGGATTAACCGATGCAGAAGAAAAGGCGAGAAGATTGCAAGTGTTAAAAGACTTTCTTGCTGGGAAAAGTCAAACCATCGATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58DS6	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Bos taurus OX=9913 GN=JMJD6 PE=2 SV=1
Q6PFM0	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Danio rerio OX=7955 GN=jmjd6 PE=2 SV=2
Q6NYC1	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Homo sapiens OX=9606 GN=JMJD6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002992 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR050910 all species →	Family	JMJD6 family arginine demethylases/lysyl-hydroxylases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12480 all species →	ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006909 all species →	Biological Process	phagocytosis	Interproscan
GO:0033749 all species →	Molecular Function	histone H4R3 demethylase activity	Interproscan
GO:0106140 all species →	Molecular Function	P-TEFb complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.1134.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.