Gene detail

Detailed information of evm.model.Ap6.1201 in Astrangia poculata

Genomic Location: Ap6:11632079...11641182
NR annotation: XP_020615933.1, uncharacterized protein LOC110053953 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1201

atgaatgcaacagacaactttctgacatcaaattttacgaacgctcagacaaagacatcactgcgaacgtacaaaaacgagtcactaagggatgttgacgttcataaactaccatcctttgttaaagatactaacgacttccttaacaaactcctcaccatcagttctttacccgccaactctatgttagtcacactcgacgtttcatcactatacactaatattccacataatgaagcattcatcccaccatcaaattcaccagctcacattcttcaactaacatcttttcttgacgttaatgtctctttaaatgacaacggtgacatcagtactgaccttacaccaaacctaccgacaaacaccaacatttactttactcttcttgccatccctcacatactaaaagccattcctttcagtctagcactccgtttacgacgcatttgttctaccgacgaaacgttcaatactcgcgctgcccaacttacaacgtaccttcaaacgaggcgctcccctaaccttcgcgatttactagtgaaggccaaacttccttctaatttgactaacccgcatccgcaacttccatccggttcttttcgttgtggaaagaactgcgccacttgtccttatattactgacggactaactacctataccttcttttctactggtgaaacgcgccacattcaatctaacctgacctgtgacactgaaaacctcatctacataattcaatgtaaccgctgtaatttacaatacataggagaaactaaacgacgtttaaaagaccgatttaatgaacaccgccgtaccatagataaccccaacagtaaatctaaacccactacagccgcacaacatttcacttcctcgcctaaccacactgctaatgacatacaattaatccccatcgaaaaagtcttctccaaccgagactcaatccttttctatgtgtcaaaccgattagatcactcagttgatccaacgtataccggtaggagatcgtacacgccattttatacaccgccagtggtaatcacaactgttcttaatggaggcagcagcaatgccaacattgcatgtccggtgaaagttcctttaagcagttggctggaggaagtgacggtatcccactttagagtatgcatcaaagacagcgcaggatacgacggccagagaagcaaagtcattgtagactacttggttattggagacctcgatccttgtacaaatgcaagctgcgagtaccacagtcactgcgtagcctcgtcttcgcaccagtttgcttgtgtttgtgaagacagctgtccgtcatatgaagaacaggtctgtgcctccaacggtcgtacattcaaaaatgtatgtttgctaaaacaagaaatctgcagaacacgtggaaactattccaattatcaccctggaagctgtacaggtttcccactacaaaaaggaaggcacgagttccaaaacgttccatcctgggcagaggatcagtgtgaagtcatcaaatttgaaccgtatacattttatcctcataagaaaatatacatacaacttactgttaaccacctgaattactctgatgccaccttcgtgcatgaggccactataccttgggttgaaggcgttaacagcactcagtttacagcctgtgttactcgagctgattacaatgaatgcttggacttctcctacgactgtccagtgaacgccacttgcatgaacagtaatggttcttattcatgtcaatgccctgttggatatcatcttgatggaaataattgtacagaagtcagctgcagtcctattggagtggcggacacaaacaagataccagacgccaatatgacttcaagctcgtactatcttcaatactatgcgtacttgggccggcttcggggaacaagaacgggaagcaatgatgcatggtgtgcaaagactacgactgacagaacagactatttacaagtcgacatggggatagtgcatgttatctgtgcggtagcaacgcaagggaaaataagtggttcgcatgtcacaagttacaagctctaa

Transcript

evm.model.Ap6.1201

ATGAATGCAACAGACAACTTTCTGACATCAAATTTTACGAACGCTCAGACAAAGACATCACTGCGAACGTACAAAAACGAGTCACTAAGGGATGTTGACGTTCATAAACTACCATCCTTTGTTAAAGATACTAACGACTTCCTTAACAAACTCCTCACCATCAGTTCTTTACCCGCCAACTCTATGTTAGTCACACTCGACGTTTCATCACTATACACTAATATTCCACATAATGAAGCATTCATCCCACCATCAAATTCACCAGCTCACATTCTTCAACTAACATCTTTTCTTGACGTTAATGTCTCTTTAAATGACAACGGTGACATCAGTACTGACCTTACACCAAACCTACCGACAAACACCAACATTTACTTTACTCTTCTTGCCATCCCTCACATACTAAAAGCCATTCCTTTCAGTCTAGCACTCCGTTTACGACGCATTTGTTCTACCGACGAAACGTTCAATACTCGCGCTGCCCAACTTACAACGTACCTTCAAACGAGGCGCTCCCCTAACCTTCGCGATTTACTAGTGAAGGCCAAACTTCCTTCTAATTTGACTAACCCGCATCCGCAACTTCCATCCGGTTCTTTTCGTTGTGGAAAGAACTGCGCCACTTGTCCTTATATTACTGACGGACTAACTACCTATACCTTCTTTTCTACTGGTGAAACGCGCCACATTCAATCTAACCTGACCTGTGACACTGAAAACCTCATCTACATAATTCAATGTAACCGCTGTAATTTACAATACATAGGAGAAACTAAACGACGTTTAAAAGACCGATTTAATGAACACCGCCGTACCATAGATAACCCCAACAGTAAATCTAAACCCACTACAGCCGCACAACATTTCACTTCCTCGCCTAACCACACTGCTAATGACATACAATTAATCCCCATCGAAAAAGTCTTCTCCAACCGAGACTCAATCCTTTTCTATGTGTCAAACCGATTAGATCACTCAGTTGATCCAACGTATACCGGTAGGAGATCGTACACGCCATTTTATACACCGCCAGTGGTAATCACAACTGTTCTTAATGGAGGCAGCAGCAATGCCAACATTGCATGTCCGGTGAAAGTTCCTTTAAGCAGTTGGCTGGAGGAAGTGACGGTATCCCACTTTAGAGTATGCATCAAAGACAGCGCAGGATACGACGGCCAGAGAAGCAAAGTCATTGTAGACTACTTGGTTATTGGAGACCTCGATCCTTGTACAAATGCAAGCTGCGAGTACCACAGTCACTGCGTAGCCTCGTCTTCGCACCAGTTTGCTTGTGTTTGTGAAGACAGCTGTCCGTCATATGAAGAACAGGTCTGTGCCTCCAACGGTCGTACATTCAAAAATGTATGTTTGCTAAAACAAGAAATCTGCAGAACACGTGGAAACTATTCCAATTATCACCCTGGAAGCTGTACAGGTTTCCCACTACAAAAAGGAAGGCACGAGTTCCAAAACGTTCCATCCTGGGCAGAGGATCAGTGTGAAGTCATCAAATTTGAACCGTATACATTTTATCCTCATAAGAAAATATACATACAACTTACTGTTAACCACCTGAATTACTCTGATGCCACCTTCGTGCATGAGGCCACTATACCTTGGGTTGAAGGCGTTAACAGCACTCAGTTTACAGCCTGTGTTACTCGAGCTGATTACAATGAATGCTTGGACTTCTCCTACGACTGTCCAGTGAACGCCACTTGCATGAACAGTAATGGTTCTTATTCATGTCAATGCCCTGTTGGATATCATCTTGATGGAAATAATTGTACAGAAGTCAGCTGCAGTCCTATTGGAGTGGCGGACACAAACAAGATACCAGACGCCAATATGACTTCAAGCTCGTACTATCTTCAATACTATGCGTACTTGGGCCGGCTTCGGGGAACAAGAACGGGAAGCAATGATGCATGGTGTGCAAAGACTACGACTGACAGAACAGACTATTTACAAGTCGACATGGGGATAGTGCATGTTATCTGTGCGGTAGCAACGCAAGGGAAAATAAGTGGTTCGCATGTCACAAGTTACAAGCTCTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF01541 all species →	GIY-YIG	GIY-YIG catalytic domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000305 all species →	Domain	GIY-YIG endonuclease	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21301 all species →	REVERSE TRANSCRIPTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.1201.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.