Gene detail

Detailed information of evm.model.Ap6.1280 in Astrangia poculata

Genomic Location: Ap6:12573528...12587389
NR annotation: XP_020621854.1, chromodomain-helicase-DNA-binding protein 5-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap6.1280

atgatctatcgttttgttacaagagccagtgttgaagagcgcatcacacaggttgccaagaagaagatgatgttgacacatcttgtggtaagacctggtctgggatcaaacaaagcagctgtgatgtccaagagcgagctgaatgacattctcagatttggtacacaagaacttttcaaagatgacactgctaaagatggagactctggtgactcaggccgtatagactatgatgaaaaagctgttctgtcactgttggatcggaccagtagccatgatgatgcacctgatgaagagaaagacatcatggccaatgaatatcttgcttcattcaaggttgccagctatgtggtgaagcagaaagatgaagatgttgaagttctcaagcaagacgcagagactgccgaccctgactactgggagaaacttctgcggcatcactatgaacagttccaagaagatgaagcaaggcatcttgggaagggaaagcgaattaggaaacaggtcagctatgtcgatggaggcatggaagatcaggaagaatcagcctggaccaacaacttgtcagacttcgaagacgacggatacagtgacgtcgacgaggaggaatcagatgaagaattcaaccaaaaaactgaaggtcgtcagagaagaggcggtcgaggcgcgtctgaaaaggatgtcaccccacctctgctggctaaagttcaaggaaacttagaggtgtttggctttaacctgcgacaacggaaggcattcctgaatgcagtgatgagatatggcctaccctctcctgagggttctcgtcgatcccagtggtttgcaagagatctccgcggaaaatcagagaaagcatttcaggcgtatgtggcgatgtttctgcgtcacctgtgtgagcctggtacagacaacagagagacatttaatgatggagtgccacgtgaaggactgcacagaacacaagtgttgaccaggatcggtatcatgagcctgataagaaagaaggtggaagagtttgctcacatcaacggctgggaagcatatccagaggaggacaacttgacagacaaaccttcaagtaagacctcatcacgtgtgtccacacccatagcggaagtcgacagcaaaaaggctgaaccggaagtggttaaaactgaggcaaaaccagaaaagaaagaccaggcagaggaaagcaaaccagagccaatggaggttgacaattctgaagcagcgaaaacaaacgagaaagaagacaaagatgctgtgaacccagaaaatggagaaccagctagctctgccgcagacaaaactgaagaaagcaaagatgtggcaaataaagacaaacaggaccaaactgaagatggagattctaacaccgacaaggagtctaagatggaggttgactcacctagcccgaaagaggaaaaaggagaggatcaggagaaagttgatacgtcggacaaaacagaggctacggacactcagaaaggagaaacgacggctgaaggcgataagcctgcagaacaaaaggagacgagtggtgatagtgacgaaaagactgataaacctgttgacgttgataaaacttcggatgaaaagagtgttgattctgaaggaacggaggacaaacaaggtgcttcggatgagaagaaagatgatagtgaggccaaagttgaagaaagtgagaaggagacgaaaacagaaccaggagaatctaaggatgaaagtgaaaaagattcagcggtcaaaatggataacggtgaaaagtcagcccaggaagaagaaaaaccttctgagaatgctgtggaggcaatggagacagatgacacatcaaagaagccaacagagtcacttgatgagggcgagaagaaatcagaaaaatccgaatctgatgagagtagcgagaaaccttcagagaaaacagactctgttcaaaaggacgaaaaaactgacggctctgttaaattggaccagaaaacaacagagaaaacaccagaaaagtctgaaacacctgacgactctgttaaatcggaccagaaaacaacagagaaaacaccagaaaagtctgaaacagctccaaaaacagaacaagctactgtgagttctgatgcagcggcgactcagaaatcagagaagtcgcctggcaagtctgccgtgactaacaagcccggcagcagcgcgcctgtagatcagcgtcgcttcatgtttaacatcgctgatggagggttcactgagctgcatacactgtgggaagtagaggagaagagaaagtgtgatgatatctggtggagatgtcatgactactggctgctggcaggagttgtcacgtatcctgaacaaatatatttcgctctcaagagtgacggaaaggaggtatccgaagaaagacacctgctttctcaggctttcctgtctctgctctctgaactagataaggttagtcacggttatggtcggtggcaggacatcgctaatgatcgcaagttttcagtgattaacgaaccttttaagaacgttactctggaatacaagaaccggttcatcgcaagacgcttcaagttgttagagcaggccctagtgatagaggaacagctaagaagagctgactccatgaagctcaggcaagatgctaaccacccggccatggctctaaatgcaaggtttgcagagttggagtgtttggcggaaagtcatcagcatttgtccaaagagtccttagcagggaacaagccggctaatgctgtgcttcataaagttcttaatcaactggaagagttactatcggatatgaaatcggacgtcaatcggctcccttcggctctggtccgaatgccgcccgttacagctcggcttaatatgtccgagagaggaatcctgagccgtcttactaaacgtgacggtccaccacctaacgtcacaatatctggaaactcaatgcagcccgcccccatgccagtggggtcagtacctatccaaccaaaggtccaacccttagtgctggctggaggcaccgtcctaccaccacctcctaacatcaagcctagaccttcttaccggtacactgtaccccaaatgtactatcctccttccatacagagcagtactgccaccatcacagttcggcctcctccccccaccactctgctgcttcccgcttccaccacagtatcaagtctagtcaagcctgggctggtacagtctgtgcctaaagcaagctctccactgataagtcatcacgtaaactcacctacaccaacacagtacgtcaccacactcctcaccaaacctgccgtcaccagcacagtgtcagcagtgccccacccagtggtgggtcctgctagctctacacccctgactccagtcatcaacagtgtctatagccttagtgcgggcaaggcaggtacagagtctcagcgcagctctacaccgcccaccactgcgatccagagtggtattggtaaaatgctgagtaaaaaagcaaccactctggtggaaaaccaaatcacctctattatacgcagagaggcttcagctatgggcttaatcagacccgatgcttcttccaaccccagctcgccctccgcaaccgaaacgcgcgtttcctcgcctgggcagagtcacgccactccccaggctccacaggaggaatccgacaagacgcagcctccgaagactggagacaagaaggacaaagatccagacgtgatctgtttggattag

Transcript

evm.model.Ap6.1280

ATGATCTATCGTTTTGTTACAAGAGCCAGTGTTGAAGAGCGCATCACACAGGTTGCCAAGAAGAAGATGATGTTGACACATCTTGTGGTAAGACCTGGTCTGGGATCAAACAAAGCAGCTGTGATGTCCAAGAGCGAGCTGAATGACATTCTCAGATTTGGTACACAAGAACTTTTCAAAGATGACACTGCTAAAGATGGAGACTCTGGTGACTCAGGCCGTATAGACTATGATGAAAAAGCTGTTCTGTCACTGTTGGATCGGACCAGTAGCCATGATGATGCACCTGATGAAGAGAAAGACATCATGGCCAATGAATATCTTGCTTCATTCAAGGTTGCCAGCTATGTGGTGAAGCAGAAAGATGAAGATGTTGAAGTTCTCAAGCAAGACGCAGAGACTGCCGACCCTGACTACTGGGAGAAACTTCTGCGGCATCACTATGAACAGTTCCAAGAAGATGAAGCAAGGCATCTTGGGAAGGGAAAGCGAATTAGGAAACAGGTCAGCTATGTCGATGGAGGCATGGAAGATCAGGAAGAATCAGCCTGGACCAACAACTTGTCAGACTTCGAAGACGACGGATACAGTGACGTCGACGAGGAGGAATCAGATGAAGAATTCAACCAAAAAACTGAAGGTCGTCAGAGAAGAGGCGGTCGAGGCGCGTCTGAAAAGGATGTCACCCCACCTCTGCTGGCTAAAGTTCAAGGAAACTTAGAGGTGTTTGGCTTTAACCTGCGACAACGGAAGGCATTCCTGAATGCAGTGATGAGATATGGCCTACCCTCTCCTGAGGGTTCTCGTCGATCCCAGTGGTTTGCAAGAGATCTCCGCGGAAAATCAGAGAAAGCATTTCAGGCGTATGTGGCGATGTTTCTGCGTCACCTGTGTGAGCCTGGTACAGACAACAGAGAGACATTTAATGATGGAGTGCCACGTGAAGGACTGCACAGAACACAAGTGTTGACCAGGATCGGTATCATGAGCCTGATAAGAAAGAAGGTGGAAGAGTTTGCTCACATCAACGGCTGGGAAGCATATCCAGAGGAGGACAACTTGACAGACAAACCTTCAAGTAAGACCTCATCACGTGTGTCCACACCCATAGCGGAAGTCGACAGCAAAAAGGCTGAACCGGAAGTGGTTAAAACTGAGGCAAAACCAGAAAAGAAAGACCAGGCAGAGGAAAGCAAACCAGAGCCAATGGAGGTTGACAATTCTGAAGCAGCGAAAACAAACGAGAAAGAAGACAAAGATGCTGTGAACCCAGAAAATGGAGAACCAGCTAGCTCTGCCGCAGACAAAACTGAAGAAAGCAAAGATGTGGCAAATAAAGACAAACAGGACCAAACTGAAGATGGAGATTCTAACACCGACAAGGAGTCTAAGATGGAGGTTGACTCACCTAGCCCGAAAGAGGAAAAAGGAGAGGATCAGGAGAAAGTTGATACGTCGGACAAAACAGAGGCTACGGACACTCAGAAAGGAGAAACGACGGCTGAAGGCGATAAGCCTGCAGAACAAAAGGAGACGAGTGGTGATAGTGACGAAAAGACTGATAAACCTGTTGACGTTGATAAAACTTCGGATGAAAAGAGTGTTGATTCTGAAGGAACGGAGGACAAACAAGGTGCTTCGGATGAGAAGAAAGATGATAGTGAGGCCAAAGTTGAAGAAAGTGAGAAGGAGACGAAAACAGAACCAGGAGAATCTAAGGATGAAAGTGAAAAAGATTCAGCGGTCAAAATGGATAACGGTGAAAAGTCAGCCCAGGAAGAAGAAAAACCTTCTGAGAATGCTGTGGAGGCAATGGAGACAGATGACACATCAAAGAAGCCAACAGAGTCACTTGATGAGGGCGAGAAGAAATCAGAAAAATCCGAATCTGATGAGAGTAGCGAGAAACCTTCAGAGAAAACAGACTCTGTTCAAAAGGACGAAAAAACTGACGGCTCTGTTAAATTGGACCAGAAAACAACAGAGAAAACACCAGAAAAGTCTGAAACACCTGACGACTCTGTTAAATCGGACCAGAAAACAACAGAGAAAACACCAGAAAAGTCTGAAACAGCTCCAAAAACAGAACAAGCTACTGTGAGTTCTGATGCAGCGGCGACTCAGAAATCAGAGAAGTCGCCTGGCAAGTCTGCCGTGACTAACAAGCCCGGCAGCAGCGCGCCTGTAGATCAGCGTCGCTTCATGTTTAACATCGCTGATGGAGGGTTCACTGAGCTGCATACACTGTGGGAAGTAGAGGAGAAGAGAAAGTGTGATGATATCTGGTGGAGATGTCATGACTACTGGCTGCTGGCAGGAGTTGTCACGTATCCTGAACAAATATATTTCGCTCTCAAGAGTGACGGAAAGGAGGTATCCGAAGAAAGACACCTGCTTTCTCAGGCTTTCCTGTCTCTGCTCTCTGAACTAGATAAGGTTAGTCACGGTTATGGTCGGTGGCAGGACATCGCTAATGATCGCAAGTTTTCAGTGATTAACGAACCTTTTAAGAACGTTACTCTGGAATACAAGAACCGGTTCATCGCAAGACGCTTCAAGTTGTTAGAGCAGGCCCTAGTGATAGAGGAACAGCTAAGAAGAGCTGACTCCATGAAGCTCAGGCAAGATGCTAACCACCCGGCCATGGCTCTAAATGCAAGGTTTGCAGAGTTGGAGTGTTTGGCGGAAAGTCATCAGCATTTGTCCAAAGAGTCCTTAGCAGGGAACAAGCCGGCTAATGCTGTGCTTCATAAAGTTCTTAATCAACTGGAAGAGTTACTATCGGATATGAAATCGGACGTCAATCGGCTCCCTTCGGCTCTGGTCCGAATGCCGCCCGTTACAGCTCGGCTTAATATGTCCGAGAGAGGAATCCTGAGCCGTCTTACTAAACGTGACGGTCCACCACCTAACGTCACAATATCTGGAAACTCAATGCAGCCCGCCCCCATGCCAGTGGGGTCAGTACCTATCCAACCAAAGGTCCAACCCTTAGTGCTGGCTGGAGGCACCGTCCTACCACCACCTCCTAACATCAAGCCTAGACCTTCTTACCGGTACACTGTACCCCAAATGTACTATCCTCCTTCCATACAGAGCAGTACTGCCACCATCACAGTTCGGCCTCCTCCCCCCACCACTCTGCTGCTTCCCGCTTCCACCACAGTATCAAGTCTAGTCAAGCCTGGGCTGGTACAGTCTGTGCCTAAAGCAAGCTCTCCACTGATAAGTCATCACGTAAACTCACCTACACCAACACAGTACGTCACCACACTCCTCACCAAACCTGCCGTCACCAGCACAGTGTCAGCAGTGCCCCACCCAGTGGTGGGTCCTGCTAGCTCTACACCCCTGACTCCAGTCATCAACAGTGTCTATAGCCTTAGTGCGGGCAAGGCAGGTACAGAGTCTCAGCGCAGCTCTACACCGCCCACCACTGCGATCCAGAGTGGTATTGGTAAAATGCTGAGTAAAAAAGCAACCACTCTGGTGGAAAACCAAATCACCTCTATTATACGCAGAGAGGCTTCAGCTATGGGCTTAATCAGACCCGATGCTTCTTCCAACCCCAGCTCGCCCTCCGCAACCGAAACGCGCGTTTCCTCGCCTGGGCAGAGTCACGCCACTCCCCAGGCTCCACAGGAGGAATCCGACAAGACGCAGCCTCCGAAGACTGGAGACAAGAAGGACAAAGATCCAGACGTGATCTGTTTGGATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12873	Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens OX=9606 GN=CHD3 PE=1 SV=3
Q14839	Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens OX=9606 GN=CHD4 PE=1 SV=2
D3ZD32	Chromodomain-helicase-DNA-binding protein 5 OS=Rattus norvegicus OX=10116 GN=Chd5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001712 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06465 all species →	DUF1087	CHD subfamily II, DUF1087	Domain	Interproscan
PF08074 all species →	CHDCT2	CHDCT2 (NUC038) domain	Domain	Interproscan
PF06461 all species →	CHDII_SANT-like	CHD subfamily II, SANT-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR009463 all species →	Domain	Domain of unknown function DUF1087	Interproscan
IPR012957 all species →	Domain	CHD, C-terminal 2	Interproscan
IPR009462 all species →	Domain	CHD subfamily II, SANT-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45623 all species →	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap6.1280.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.